Hb_002888_100

Information

Type -
Description -
Location Contig2888: 114369-120259
Sequence    

Annotation

kegg
ID pda:103699074
description uncharacterized LOC103699074
nr
ID XP_008779341.1
description PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID U5G389
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s00560g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002888_100 0.0 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
2 Hb_001562_030 0.0800383556 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
3 Hb_012787_060 0.0874711983 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
4 Hb_000098_260 0.095448964 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
5 Hb_001048_070 0.0989531898 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
6 Hb_008725_020 0.1004459299 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
7 Hb_004634_030 0.1013432117 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000631_100 0.1053286119 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
9 Hb_000411_020 0.1054834179 - - cytochrome P450, putative [Ricinus communis]
10 Hb_004659_100 0.1058125029 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002641_140 0.1058188302 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_001198_180 0.108573812 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
13 Hb_004631_100 0.1087456942 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
14 Hb_003849_200 0.1097493348 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
15 Hb_189208_050 0.1111522602 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
16 Hb_000563_630 0.112241836 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
17 Hb_002325_050 0.1177208543 transcription factor TF Family: MYB MYB transcriptional factor [Populus nigra]
18 Hb_008021_040 0.1189747798 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
19 Hb_033053_020 0.1197062791 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
20 Hb_092975_010 0.120164159 - - hypothetical protein JCGZ_04359 [Jatropha curcas]

Gene co-expression network

sample Hb_002888_100 Hb_002888_100 Hb_001562_030 Hb_001562_030 Hb_002888_100--Hb_001562_030 Hb_012787_060 Hb_012787_060 Hb_002888_100--Hb_012787_060 Hb_000098_260 Hb_000098_260 Hb_002888_100--Hb_000098_260 Hb_001048_070 Hb_001048_070 Hb_002888_100--Hb_001048_070 Hb_008725_020 Hb_008725_020 Hb_002888_100--Hb_008725_020 Hb_004634_030 Hb_004634_030 Hb_002888_100--Hb_004634_030 Hb_001198_180 Hb_001198_180 Hb_001562_030--Hb_001198_180 Hb_001562_030--Hb_008725_020 Hb_002739_160 Hb_002739_160 Hb_001562_030--Hb_002739_160 Hb_092975_010 Hb_092975_010 Hb_001562_030--Hb_092975_010 Hb_030827_080 Hb_030827_080 Hb_001562_030--Hb_030827_080 Hb_012787_060--Hb_001048_070 Hb_002641_140 Hb_002641_140 Hb_012787_060--Hb_002641_140 Hb_012787_060--Hb_000098_260 Hb_007479_080 Hb_007479_080 Hb_012787_060--Hb_007479_080 Hb_012787_060--Hb_004634_030 Hb_000098_260--Hb_092975_010 Hb_000098_260--Hb_002641_140 Hb_000365_430 Hb_000365_430 Hb_000098_260--Hb_000365_430 Hb_000411_020 Hb_000411_020 Hb_000098_260--Hb_000411_020 Hb_000742_130 Hb_000742_130 Hb_000098_260--Hb_000742_130 Hb_000645_160 Hb_000645_160 Hb_000098_260--Hb_000645_160 Hb_003849_200 Hb_003849_200 Hb_001048_070--Hb_003849_200 Hb_008021_040 Hb_008021_040 Hb_001048_070--Hb_008021_040 Hb_001048_070--Hb_002641_140 Hb_000342_020 Hb_000342_020 Hb_001048_070--Hb_000342_020 Hb_002325_050 Hb_002325_050 Hb_008725_020--Hb_002325_050 Hb_008725_020--Hb_003849_200 Hb_001013_080 Hb_001013_080 Hb_008725_020--Hb_001013_080 Hb_008725_020--Hb_001198_180 Hb_000991_080 Hb_000991_080 Hb_008725_020--Hb_000991_080 Hb_002205_150 Hb_002205_150 Hb_004634_030--Hb_002205_150 Hb_142026_010 Hb_142026_010 Hb_004634_030--Hb_142026_010 Hb_012539_100 Hb_012539_100 Hb_004634_030--Hb_012539_100 Hb_004634_030--Hb_008725_020 Hb_004634_030--Hb_000098_260 Hb_002902_040 Hb_002902_040 Hb_004634_030--Hb_002902_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0105522 0.60298 0.641944 1.03297 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.374904 0.225982

CAGE analysis