Hb_002205_150

Information

Type -
Description -
Location Contig2205: 125089-125685
Sequence    

Annotation

kegg
ID rcu:RCOM_0689750
description RING-H2 finger protein ATL3C, putative
nr
ID XP_002520866.1
description RING-H2 finger protein ATL3C, putative [Ricinus communis]
swissprot
ID Q9SG96
description RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1
trembl
ID B9S4E7
description RING-H2 finger protein ATL3C, putative OS=Ricinus communis GN=RCOM_0689750 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl74

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_150 0.0 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
2 Hb_142026_010 0.0580645685 - - PREDICTED: probable mannitol dehydrogenase [Jatropha curcas]
3 Hb_012539_100 0.0647486355 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK11 [Jatropha curcas]
4 Hb_004228_070 0.072368675 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
5 Hb_003454_050 0.0746591466 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
6 Hb_002902_040 0.0772144149 - - PREDICTED: peroxidase 51 [Jatropha curcas]
7 Hb_004634_030 0.0775856571 - - conserved hypothetical protein [Ricinus communis]
8 Hb_106089_010 0.0830002395 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
9 Hb_021576_130 0.0844632485 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
10 Hb_002151_020 0.0881213815 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
11 Hb_007221_040 0.0925809113 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
12 Hb_000742_130 0.1051454143 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
13 Hb_000163_180 0.1054196622 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
14 Hb_003092_020 0.1069770715 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
15 Hb_019496_040 0.1078084941 - - kinase family protein [Populus trichocarpa]
16 Hb_003581_050 0.1111764917 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
17 Hb_043630_030 0.11289551 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
18 Hb_003747_250 0.1175532263 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
19 Hb_000098_260 0.1183868103 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
20 Hb_008749_010 0.1188656149 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_002205_150 Hb_002205_150 Hb_142026_010 Hb_142026_010 Hb_002205_150--Hb_142026_010 Hb_012539_100 Hb_012539_100 Hb_002205_150--Hb_012539_100 Hb_004228_070 Hb_004228_070 Hb_002205_150--Hb_004228_070 Hb_003454_050 Hb_003454_050 Hb_002205_150--Hb_003454_050 Hb_002902_040 Hb_002902_040 Hb_002205_150--Hb_002902_040 Hb_004634_030 Hb_004634_030 Hb_002205_150--Hb_004634_030 Hb_142026_010--Hb_002902_040 Hb_019496_040 Hb_019496_040 Hb_142026_010--Hb_019496_040 Hb_106089_010 Hb_106089_010 Hb_142026_010--Hb_106089_010 Hb_142026_010--Hb_003454_050 Hb_000163_180 Hb_000163_180 Hb_142026_010--Hb_000163_180 Hb_012539_100--Hb_004634_030 Hb_012539_100--Hb_142026_010 Hb_012539_100--Hb_106089_010 Hb_012539_100--Hb_002902_040 Hb_007221_040 Hb_007221_040 Hb_012539_100--Hb_007221_040 Hb_021576_130 Hb_021576_130 Hb_004228_070--Hb_021576_130 Hb_004228_070--Hb_003454_050 Hb_007123_010 Hb_007123_010 Hb_004228_070--Hb_007123_010 Hb_044653_050 Hb_044653_050 Hb_004228_070--Hb_044653_050 Hb_006922_020 Hb_006922_020 Hb_004228_070--Hb_006922_020 Hb_003454_050--Hb_106089_010 Hb_003454_050--Hb_002902_040 Hb_026240_020 Hb_026240_020 Hb_003454_050--Hb_026240_020 Hb_002151_020 Hb_002151_020 Hb_002902_040--Hb_002151_020 Hb_002902_040--Hb_019496_040 Hb_000342_020 Hb_000342_020 Hb_002902_040--Hb_000342_020 Hb_144703_010 Hb_144703_010 Hb_002902_040--Hb_144703_010 Hb_004634_030--Hb_142026_010 Hb_008725_020 Hb_008725_020 Hb_004634_030--Hb_008725_020 Hb_000098_260 Hb_000098_260 Hb_004634_030--Hb_000098_260 Hb_004634_030--Hb_002902_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.65177 4.75896 6.44971 0.0440889 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.44311 3.40122

CAGE analysis