Hb_007123_010

Information

Type -
Description -
Location Contig7123: 51012-54834
Sequence    

Annotation

kegg
ID rcu:RCOM_0843030
description Auxin efflux carrier component, putative
nr
ID XP_012072212.1
description PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
swissprot
ID Q9S7Z8
description Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1
trembl
ID A0A067L1S2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04692 PE=4 SV=1
Gene Ontology
ID GO:0016021
description pin1-like family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55348: 51030-54801 , PASA_asmbl_55349: 51447-51929 , PASA_asmbl_55350: 52247-52407 , PASA_asmbl_55351: 54811-54998
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007123_010 0.0 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
2 Hb_006922_020 0.0588211388 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
3 Hb_000103_370 0.0648423866 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
4 Hb_021576_130 0.0802830562 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
5 Hb_004228_070 0.0866779987 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
6 Hb_054926_010 0.0875187603 - - glutamate receptor 2 plant, putative [Ricinus communis]
7 Hb_002490_060 0.0897688071 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
8 Hb_006196_030 0.0941033072 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
9 Hb_039075_020 0.0954563018 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
10 Hb_000996_070 0.1025167077 - - unnamed protein product [Vitis vinifera]
11 Hb_008019_010 0.1041083387 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
12 Hb_007130_020 0.110521287 - - -
13 Hb_002053_180 0.111483425 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
14 Hb_001794_040 0.1116965828 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
15 Hb_124677_090 0.1133570144 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008895_020 0.1154249591 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
17 Hb_003873_020 0.115710266 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
18 Hb_044653_050 0.1169673208 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
19 Hb_001301_260 0.1182800278 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
20 Hb_000627_040 0.1187228156 - - leucine-rich repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007123_010 Hb_007123_010 Hb_006922_020 Hb_006922_020 Hb_007123_010--Hb_006922_020 Hb_000103_370 Hb_000103_370 Hb_007123_010--Hb_000103_370 Hb_021576_130 Hb_021576_130 Hb_007123_010--Hb_021576_130 Hb_004228_070 Hb_004228_070 Hb_007123_010--Hb_004228_070 Hb_054926_010 Hb_054926_010 Hb_007123_010--Hb_054926_010 Hb_002490_060 Hb_002490_060 Hb_007123_010--Hb_002490_060 Hb_006922_020--Hb_002490_060 Hb_000627_040 Hb_000627_040 Hb_006922_020--Hb_000627_040 Hb_002053_180 Hb_002053_180 Hb_006922_020--Hb_002053_180 Hb_006922_020--Hb_000103_370 Hb_006922_020--Hb_004228_070 Hb_000002_370 Hb_000002_370 Hb_000103_370--Hb_000002_370 Hb_000103_370--Hb_054926_010 Hb_008019_010 Hb_008019_010 Hb_000103_370--Hb_008019_010 Hb_000809_130 Hb_000809_130 Hb_000103_370--Hb_000809_130 Hb_021576_130--Hb_004228_070 Hb_039075_020 Hb_039075_020 Hb_021576_130--Hb_039075_020 Hb_003454_050 Hb_003454_050 Hb_021576_130--Hb_003454_050 Hb_002205_150 Hb_002205_150 Hb_021576_130--Hb_002205_150 Hb_021576_130--Hb_006922_020 Hb_004228_070--Hb_002205_150 Hb_004228_070--Hb_003454_050 Hb_044653_050 Hb_044653_050 Hb_004228_070--Hb_044653_050 Hb_054926_010--Hb_008019_010 Hb_004040_010 Hb_004040_010 Hb_054926_010--Hb_004040_010 Hb_007632_230 Hb_007632_230 Hb_054926_010--Hb_007632_230 Hb_018134_010 Hb_018134_010 Hb_054926_010--Hb_018134_010 Hb_002490_060--Hb_000627_040 Hb_001366_290 Hb_001366_290 Hb_002490_060--Hb_001366_290 Hb_006196_030 Hb_006196_030 Hb_002490_060--Hb_006196_030 Hb_007237_020 Hb_007237_020 Hb_002490_060--Hb_007237_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0220401 12.2523 28.9806 26.6538 0.0142301 0.0270524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0500085 0.0131172 0.300401 2.22856 15.7442

CAGE analysis