Hb_054926_010

Information

Type -
Description -
Location Contig54926: 37-548
Sequence    

Annotation

kegg
ID rcu:RCOM_0919910
description glutamate receptor 2 plant, putative
nr
ID XP_002515377.1
description glutamate receptor 2 plant, putative [Ricinus communis]
swissprot
ID Q8LGN0
description Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3
trembl
ID B9RNQ8
description Glutamate receptor OS=Ricinus communis GN=RCOM_0919910 PE=3 SV=1
Gene Ontology
ID GO:0016020
description glutamate receptor -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054926_010 0.0 - - glutamate receptor 2 plant, putative [Ricinus communis]
2 Hb_008019_010 0.0647940983 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
3 Hb_004040_010 0.0784064743 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
4 Hb_007632_230 0.0838247924 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
5 Hb_000103_370 0.0855114388 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
6 Hb_007123_010 0.0875187603 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
7 Hb_018134_010 0.0932145168 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
8 Hb_000319_010 0.0981743861 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
9 Hb_124677_090 0.0981921913 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004553_040 0.1027110966 - - PREDICTED: protein YLS9-like [Jatropha curcas]
11 Hb_001221_070 0.1100058227 - - PREDICTED: calcium-binding protein CML38-like [Jatropha curcas]
12 Hb_018563_010 0.110178031 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
13 Hb_007357_010 0.1113633691 - - cytochrome P450, putative [Ricinus communis]
14 Hb_001477_060 0.1133510171 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
15 Hb_001277_370 0.1156795094 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
16 Hb_008406_060 0.1158690915 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
17 Hb_006922_020 0.1168711172 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
18 Hb_004228_070 0.1180652829 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
19 Hb_003071_050 0.1240069083 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
20 Hb_007130_020 0.1264626649 - - -

Gene co-expression network

sample Hb_054926_010 Hb_054926_010 Hb_008019_010 Hb_008019_010 Hb_054926_010--Hb_008019_010 Hb_004040_010 Hb_004040_010 Hb_054926_010--Hb_004040_010 Hb_007632_230 Hb_007632_230 Hb_054926_010--Hb_007632_230 Hb_000103_370 Hb_000103_370 Hb_054926_010--Hb_000103_370 Hb_007123_010 Hb_007123_010 Hb_054926_010--Hb_007123_010 Hb_018134_010 Hb_018134_010 Hb_054926_010--Hb_018134_010 Hb_008019_010--Hb_018134_010 Hb_008019_010--Hb_004040_010 Hb_059318_010 Hb_059318_010 Hb_008019_010--Hb_059318_010 Hb_111997_010 Hb_111997_010 Hb_008019_010--Hb_111997_010 Hb_008019_010--Hb_000103_370 Hb_004040_010--Hb_018134_010 Hb_011794_050 Hb_011794_050 Hb_004040_010--Hb_011794_050 Hb_000319_010 Hb_000319_010 Hb_004040_010--Hb_000319_010 Hb_000878_090 Hb_000878_090 Hb_004040_010--Hb_000878_090 Hb_001221_070 Hb_001221_070 Hb_007632_230--Hb_001221_070 Hb_001277_370 Hb_001277_370 Hb_007632_230--Hb_001277_370 Hb_004553_040 Hb_004553_040 Hb_007632_230--Hb_004553_040 Hb_007632_230--Hb_000319_010 Hb_007357_010 Hb_007357_010 Hb_007632_230--Hb_007357_010 Hb_000103_370--Hb_007123_010 Hb_000002_370 Hb_000002_370 Hb_000103_370--Hb_000002_370 Hb_006922_020 Hb_006922_020 Hb_000103_370--Hb_006922_020 Hb_000809_130 Hb_000809_130 Hb_000103_370--Hb_000809_130 Hb_007123_010--Hb_006922_020 Hb_021576_130 Hb_021576_130 Hb_007123_010--Hb_021576_130 Hb_004228_070 Hb_004228_070 Hb_007123_010--Hb_004228_070 Hb_002490_060 Hb_002490_060 Hb_007123_010--Hb_002490_060 Hb_018134_010--Hb_111997_010 Hb_001677_170 Hb_001677_170 Hb_018134_010--Hb_001677_170 Hb_018134_010--Hb_059318_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 34.5222 56.267 48.9183 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.194603 0.152853 0 2.41759 31.0238

CAGE analysis