Hb_011794_050

Information

Type -
Description -
Location Contig11794: 26066-29198
Sequence    

Annotation

kegg
ID rcu:RCOM_1615240
description transcription factor, putative (EC:1.3.1.74)
nr
ID XP_002511859.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9FN69
description Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1
trembl
ID B9RDS0
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1615240 PE=4 SV=1
Gene Ontology
ID GO:0016491
description basic helix-loop-helix regulatory family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05398: 26572-27009 , PASA_asmbl_05399: 27176-28099 , PASA_asmbl_05400: 27176-27896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011794_050 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_189208_060 0.0867652705 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
3 Hb_004040_010 0.0874898823 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
4 Hb_002374_030 0.1077447138 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
5 Hb_059318_010 0.1079221566 - - glutamate receptor 2 plant, putative [Ricinus communis]
6 Hb_026016_010 0.1119305758 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_074966_010 0.1120093087 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
8 Hb_000878_090 0.1127569452 - - sucrose-phosphatase family protein [Populus trichocarpa]
9 Hb_000002_370 0.1140211564 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
10 Hb_001160_050 0.1146867644 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
11 Hb_000319_010 0.1154849922 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
12 Hb_001366_390 0.1164194067 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
13 Hb_000152_410 0.1214702372 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
14 Hb_008019_010 0.1225854406 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
15 Hb_004553_040 0.1249469352 - - PREDICTED: protein YLS9-like [Jatropha curcas]
16 Hb_018134_010 0.1256751018 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
17 Hb_111997_010 0.127968373 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
18 Hb_002596_090 0.1298027407 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
19 Hb_001926_020 0.132766162 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
20 Hb_000035_140 0.13283029 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_011794_050 Hb_011794_050 Hb_189208_060 Hb_189208_060 Hb_011794_050--Hb_189208_060 Hb_004040_010 Hb_004040_010 Hb_011794_050--Hb_004040_010 Hb_002374_030 Hb_002374_030 Hb_011794_050--Hb_002374_030 Hb_059318_010 Hb_059318_010 Hb_011794_050--Hb_059318_010 Hb_026016_010 Hb_026016_010 Hb_011794_050--Hb_026016_010 Hb_074966_010 Hb_074966_010 Hb_011794_050--Hb_074966_010 Hb_001160_050 Hb_001160_050 Hb_189208_060--Hb_001160_050 Hb_189208_060--Hb_002374_030 Hb_000836_420 Hb_000836_420 Hb_189208_060--Hb_000836_420 Hb_001660_080 Hb_001660_080 Hb_189208_060--Hb_001660_080 Hb_000152_410 Hb_000152_410 Hb_189208_060--Hb_000152_410 Hb_008019_010 Hb_008019_010 Hb_004040_010--Hb_008019_010 Hb_054926_010 Hb_054926_010 Hb_004040_010--Hb_054926_010 Hb_018134_010 Hb_018134_010 Hb_004040_010--Hb_018134_010 Hb_000319_010 Hb_000319_010 Hb_004040_010--Hb_000319_010 Hb_000878_090 Hb_000878_090 Hb_004040_010--Hb_000878_090 Hb_002374_030--Hb_001160_050 Hb_008406_070 Hb_008406_070 Hb_002374_030--Hb_008406_070 Hb_000071_090 Hb_000071_090 Hb_002374_030--Hb_000071_090 Hb_000032_090 Hb_000032_090 Hb_002374_030--Hb_000032_090 Hb_002374_030--Hb_000836_420 Hb_059318_010--Hb_074966_010 Hb_032731_010 Hb_032731_010 Hb_059318_010--Hb_032731_010 Hb_001926_020 Hb_001926_020 Hb_059318_010--Hb_001926_020 Hb_003777_120 Hb_003777_120 Hb_059318_010--Hb_003777_120 Hb_059318_010--Hb_008019_010 Hb_000049_030 Hb_000049_030 Hb_059318_010--Hb_000049_030 Hb_002301_340 Hb_002301_340 Hb_026016_010--Hb_002301_340 Hb_029584_110 Hb_029584_110 Hb_026016_010--Hb_029584_110 Hb_026016_010--Hb_189208_060 Hb_000402_180 Hb_000402_180 Hb_026016_010--Hb_000402_180 Hb_008202_010 Hb_008202_010 Hb_026016_010--Hb_008202_010 Hb_074966_010--Hb_001926_020 Hb_111997_010 Hb_111997_010 Hb_074966_010--Hb_111997_010 Hb_074966_010--Hb_003777_120 Hb_074966_010--Hb_032731_010 Hb_005888_050 Hb_005888_050 Hb_074966_010--Hb_005888_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.70506 2.9105 1.2648 0.0186544 0.00871934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0452874 0 0 0.134681 1.01655

CAGE analysis