Hb_002301_340

Information

Type transcription factor
Description TF Family: B3
Location Contig2301: 329143-332035
Sequence    

Annotation

kegg
ID rcu:RCOM_1674130
description hypothetical protein
nr
ID AGT56425.1
description leafy cotyledon 2 [Ricinus communis]
swissprot
ID Q1PFR7
description B3 domain-containing transcription factor LEC2 OS=Arabidopsis thaliana GN=LEC2 PE=2 SV=1
trembl
ID V9P4F9
description Leafy cotyledon 2 OS=Ricinus communis GN=LEC2 PE=2 SV=1
Gene Ontology
ID GO:0005634
description b3 domain-containing transcription factor lec2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24177: 329703-331831 , PASA_asmbl_24178: 331856-332200
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_340 0.0 transcription factor TF Family: B3 leafy cotyledon 2 [Ricinus communis]
2 Hb_026016_010 0.0783238472 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_070613_010 0.080749346 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
4 Hb_000402_180 0.1096684973 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
5 Hb_012496_020 0.1161759782 - - receptor serine/threonine kinase, putative [Ricinus communis]
6 Hb_167206_010 0.1253006439 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
7 Hb_004553_040 0.1310838097 - - PREDICTED: protein YLS9-like [Jatropha curcas]
8 Hb_002783_130 0.1372952575 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
9 Hb_186995_010 0.1382793995 - - hypothetical protein POPTR_0012s01755g [Populus trichocarpa]
10 Hb_182167_010 0.1421535921 - - hypothetical protein PHAVU_001G0486001g, partial [Phaseolus vulgaris]
11 Hb_000319_010 0.143872388 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
12 Hb_001221_070 0.1444774611 - - PREDICTED: calcium-binding protein CML38-like [Jatropha curcas]
13 Hb_189208_060 0.1450120055 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
14 Hb_001660_080 0.1452946899 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
15 Hb_003929_040 0.1461148716 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
16 Hb_036492_020 0.1469687798 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
17 Hb_008810_030 0.1482026868 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
18 Hb_004109_150 0.1488512462 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
19 Hb_001660_130 0.1493717255 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
20 Hb_134022_010 0.1522931617 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_340 Hb_002301_340 Hb_026016_010 Hb_026016_010 Hb_002301_340--Hb_026016_010 Hb_070613_010 Hb_070613_010 Hb_002301_340--Hb_070613_010 Hb_000402_180 Hb_000402_180 Hb_002301_340--Hb_000402_180 Hb_012496_020 Hb_012496_020 Hb_002301_340--Hb_012496_020 Hb_167206_010 Hb_167206_010 Hb_002301_340--Hb_167206_010 Hb_004553_040 Hb_004553_040 Hb_002301_340--Hb_004553_040 Hb_029584_110 Hb_029584_110 Hb_026016_010--Hb_029584_110 Hb_189208_060 Hb_189208_060 Hb_026016_010--Hb_189208_060 Hb_011794_050 Hb_011794_050 Hb_026016_010--Hb_011794_050 Hb_026016_010--Hb_000402_180 Hb_008202_010 Hb_008202_010 Hb_026016_010--Hb_008202_010 Hb_002548_020 Hb_002548_020 Hb_070613_010--Hb_002548_020 Hb_134022_010 Hb_134022_010 Hb_070613_010--Hb_134022_010 Hb_070613_010--Hb_000402_180 Hb_002783_130 Hb_002783_130 Hb_070613_010--Hb_002783_130 Hb_002110_050 Hb_002110_050 Hb_070613_010--Hb_002110_050 Hb_036492_020 Hb_036492_020 Hb_000402_180--Hb_036492_020 Hb_000402_180--Hb_134022_010 Hb_003929_040 Hb_003929_040 Hb_000402_180--Hb_003929_040 Hb_001660_130 Hb_001660_130 Hb_000402_180--Hb_001660_130 Hb_008810_030 Hb_008810_030 Hb_000402_180--Hb_008810_030 Hb_186995_010 Hb_186995_010 Hb_012496_020--Hb_186995_010 Hb_012496_020--Hb_167206_010 Hb_000438_200 Hb_000438_200 Hb_012496_020--Hb_000438_200 Hb_182167_010 Hb_182167_010 Hb_012496_020--Hb_182167_010 Hb_115962_010 Hb_115962_010 Hb_012496_020--Hb_115962_010 Hb_005381_010 Hb_005381_010 Hb_012496_020--Hb_005381_010 Hb_167206_010--Hb_004553_040 Hb_167206_010--Hb_186995_010 Hb_001277_370 Hb_001277_370 Hb_167206_010--Hb_001277_370 Hb_018563_010 Hb_018563_010 Hb_167206_010--Hb_018563_010 Hb_000319_010 Hb_000319_010 Hb_167206_010--Hb_000319_010 Hb_004553_040--Hb_001277_370 Hb_001221_070 Hb_001221_070 Hb_004553_040--Hb_001221_070 Hb_007632_230 Hb_007632_230 Hb_004553_040--Hb_007632_230 Hb_004553_040--Hb_000319_010 Hb_004553_040--Hb_018563_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.157551 0.164027 0.0635307 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0610048

CAGE analysis