Hb_002548_020

Information

Type -
Description -
Location Contig2548: 31359-39245
Sequence    

Annotation

kegg
ID pop:POPTR_0015s01990g
description POPTRDRAFT_251037; hypothetical protein
nr
ID XP_012066187.1
description PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
swissprot
ID D7SFH9
description Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 OS=Arabidopsis thaliana GN=GDPDL2 PE=1 SV=1
trembl
ID A0A067LE94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23767 PE=3 SV=1
Gene Ontology
ID GO:0004672
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002548_020 0.0 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
2 Hb_002110_050 0.0550068091 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004241_100 0.0844380527 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
4 Hb_002218_080 0.0847569865 - - Ankyrin repeat family protein, putative [Theobroma cacao]
5 Hb_070613_010 0.0991136563 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
6 Hb_000127_200 0.1024887905 - - PREDICTED: uncharacterized protein LOC100255537 [Vitis vinifera]
7 Hb_160576_010 0.1123067533 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
8 Hb_001198_170 0.1131307552 - - -
9 Hb_006002_020 0.1148876929 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
10 Hb_000032_230 0.1186265625 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
11 Hb_134022_010 0.1230524779 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
12 Hb_002811_320 0.1268130312 - - cation-transporting atpase plant, putative [Ricinus communis]
13 Hb_000925_110 0.1288695246 - - Spotted leaf protein, putative [Ricinus communis]
14 Hb_155015_020 0.1291197809 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
15 Hb_001310_080 0.1357013535 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
16 Hb_002783_130 0.1368976441 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
17 Hb_001956_160 0.1370693819 - - hypothetical protein L484_009438 [Morus notabilis]
18 Hb_000024_020 0.1374508457 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
19 Hb_008948_110 0.1396894802 - - PREDICTED: peroxidase 25 [Jatropha curcas]
20 Hb_002066_050 0.1457184224 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]

Gene co-expression network

sample Hb_002548_020 Hb_002548_020 Hb_002110_050 Hb_002110_050 Hb_002548_020--Hb_002110_050 Hb_004241_100 Hb_004241_100 Hb_002548_020--Hb_004241_100 Hb_002218_080 Hb_002218_080 Hb_002548_020--Hb_002218_080 Hb_070613_010 Hb_070613_010 Hb_002548_020--Hb_070613_010 Hb_000127_200 Hb_000127_200 Hb_002548_020--Hb_000127_200 Hb_160576_010 Hb_160576_010 Hb_002548_020--Hb_160576_010 Hb_002110_050--Hb_002218_080 Hb_002110_050--Hb_004241_100 Hb_002110_050--Hb_160576_010 Hb_000032_230 Hb_000032_230 Hb_002110_050--Hb_000032_230 Hb_134022_010 Hb_134022_010 Hb_002110_050--Hb_134022_010 Hb_004241_100--Hb_002218_080 Hb_155015_020 Hb_155015_020 Hb_004241_100--Hb_155015_020 Hb_002811_320 Hb_002811_320 Hb_004241_100--Hb_002811_320 Hb_004241_100--Hb_000032_230 Hb_001310_080 Hb_001310_080 Hb_002218_080--Hb_001310_080 Hb_113396_010 Hb_113396_010 Hb_002218_080--Hb_113396_010 Hb_000024_020 Hb_000024_020 Hb_002218_080--Hb_000024_020 Hb_004112_050 Hb_004112_050 Hb_002218_080--Hb_004112_050 Hb_002301_340 Hb_002301_340 Hb_070613_010--Hb_002301_340 Hb_070613_010--Hb_134022_010 Hb_000402_180 Hb_000402_180 Hb_070613_010--Hb_000402_180 Hb_002783_130 Hb_002783_130 Hb_070613_010--Hb_002783_130 Hb_070613_010--Hb_002110_050 Hb_000358_170 Hb_000358_170 Hb_000127_200--Hb_000358_170 Hb_001198_170 Hb_001198_170 Hb_000127_200--Hb_001198_170 Hb_001257_120 Hb_001257_120 Hb_000127_200--Hb_001257_120 Hb_000127_200--Hb_004241_100 Hb_001894_060 Hb_001894_060 Hb_000127_200--Hb_001894_060 Hb_000060_100 Hb_000060_100 Hb_160576_010--Hb_000060_100 Hb_160576_010--Hb_000032_230 Hb_160576_010--Hb_002218_080 Hb_001956_160 Hb_001956_160 Hb_160576_010--Hb_001956_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.34653 0.703887 0.703779 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.254883

CAGE analysis