Hb_000127_200

Information

Type -
Description -
Location Contig127: 253398-262907
Sequence    

Annotation

kegg
ID vvi:100255537
description uncharacterized LOC100255537
nr
ID XP_002279251.2
description PREDICTED: uncharacterized protein LOC100255537 [Vitis vinifera]
swissprot
ID Q0WPR6
description Auxin-responsive protein SAUR65 OS=Arabidopsis thaliana GN=SAUR65 PE=2 SV=1
trembl
ID A0A061DYM7
description SAUR-like auxin-responsive protein family, putative OS=Theobroma cacao GN=TCM_006517 PE=4 SV=1
Gene Ontology
ID GO:0009733
description saur-like auxin-responsive protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08305: 254373-254805
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_200 0.0 - - PREDICTED: uncharacterized protein LOC100255537 [Vitis vinifera]
2 Hb_000358_170 0.0936512399 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
3 Hb_001198_170 0.0989150351 - - -
4 Hb_002548_020 0.1024887905 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
5 Hb_001257_120 0.110202073 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
6 Hb_004241_100 0.1168040748 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
7 Hb_001894_060 0.1245127326 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
8 Hb_002811_320 0.1253280947 - - cation-transporting atpase plant, putative [Ricinus communis]
9 Hb_000925_110 0.1255861748 - - Spotted leaf protein, putative [Ricinus communis]
10 Hb_002110_050 0.1262134762 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002218_080 0.1269033383 - - Ankyrin repeat family protein, putative [Theobroma cacao]
12 Hb_155015_020 0.1293249062 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
13 Hb_006002_020 0.1301828607 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
14 Hb_000024_020 0.130979051 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
15 Hb_004079_040 0.1367809455 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
16 Hb_000665_090 0.137146099 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002066_050 0.1425629711 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
18 Hb_160576_010 0.1458457423 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
19 Hb_007441_150 0.1462660223 - - Ankyrin repeat family protein [Theobroma cacao]
20 Hb_096930_010 0.1515501645 - - hypothetical protein JCGZ_27059 [Jatropha curcas]

Gene co-expression network

sample Hb_000127_200 Hb_000127_200 Hb_000358_170 Hb_000358_170 Hb_000127_200--Hb_000358_170 Hb_001198_170 Hb_001198_170 Hb_000127_200--Hb_001198_170 Hb_002548_020 Hb_002548_020 Hb_000127_200--Hb_002548_020 Hb_001257_120 Hb_001257_120 Hb_000127_200--Hb_001257_120 Hb_004241_100 Hb_004241_100 Hb_000127_200--Hb_004241_100 Hb_001894_060 Hb_001894_060 Hb_000127_200--Hb_001894_060 Hb_000358_170--Hb_001257_120 Hb_010369_010 Hb_010369_010 Hb_000358_170--Hb_010369_010 Hb_000358_170--Hb_001198_170 Hb_003209_120 Hb_003209_120 Hb_000358_170--Hb_003209_120 Hb_004079_040 Hb_004079_040 Hb_000358_170--Hb_004079_040 Hb_001198_170--Hb_001257_120 Hb_002811_320 Hb_002811_320 Hb_001198_170--Hb_002811_320 Hb_155015_020 Hb_155015_020 Hb_001198_170--Hb_155015_020 Hb_001198_170--Hb_002548_020 Hb_002110_050 Hb_002110_050 Hb_002548_020--Hb_002110_050 Hb_002548_020--Hb_004241_100 Hb_002218_080 Hb_002218_080 Hb_002548_020--Hb_002218_080 Hb_070613_010 Hb_070613_010 Hb_002548_020--Hb_070613_010 Hb_160576_010 Hb_160576_010 Hb_002548_020--Hb_160576_010 Hb_172240_010 Hb_172240_010 Hb_001257_120--Hb_172240_010 Hb_001257_120--Hb_002811_320 Hb_001257_120--Hb_155015_020 Hb_098175_010 Hb_098175_010 Hb_001257_120--Hb_098175_010 Hb_004241_100--Hb_002110_050 Hb_004241_100--Hb_002218_080 Hb_004241_100--Hb_155015_020 Hb_004241_100--Hb_002811_320 Hb_000032_230 Hb_000032_230 Hb_004241_100--Hb_000032_230 Hb_007441_150 Hb_007441_150 Hb_001894_060--Hb_007441_150 Hb_158926_010 Hb_158926_010 Hb_001894_060--Hb_158926_010 Hb_000808_090 Hb_000808_090 Hb_001894_060--Hb_000808_090 Hb_029622_080 Hb_029622_080 Hb_001894_060--Hb_029622_080 Hb_032260_100 Hb_032260_100 Hb_001894_060--Hb_032260_100 Hb_101058_020 Hb_101058_020 Hb_001894_060--Hb_101058_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.52545 0.740343 0.932754 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0444478 0 0 0.180658

CAGE analysis