Hb_101058_020

Information

Type -
Description -
Location Contig101058: 14164-15997
Sequence    

Annotation

kegg
ID tcc:TCM_015936
description DWNN domain isoform 1
nr
ID XP_007039788.1
description DWNN domain isoform 2 [Theobroma cacao]
swissprot
ID O94264
description Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.15c PE=3 SV=1
trembl
ID A0A061GB76
description DWNN domain isoform 2 OS=Theobroma cacao GN=TCM_015936 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00603: 14405-14925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101058_020 0.0 - - DWNN domain isoform 2 [Theobroma cacao]
2 Hb_158926_010 0.0738051761 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
3 Hb_007894_020 0.0743176371 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
4 Hb_022137_020 0.0961883336 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
5 Hb_000665_090 0.1123203412 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001894_060 0.1177464332 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
7 Hb_004079_040 0.12267466 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
8 Hb_000808_090 0.1253975535 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
9 Hb_002542_030 0.1358786756 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
10 Hb_124677_020 0.1390949709 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
11 Hb_155946_030 0.1431709624 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
12 Hb_000714_080 0.1458505711 transcription factor TF Family: Trihelix GT-2 factor [Glycine max]
13 Hb_091826_020 0.1491042547 - - hypothetical protein JCGZ_04975 [Jatropha curcas]
14 Hb_002066_050 0.1520192465 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
15 Hb_002133_010 0.152244866 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
16 Hb_082225_010 0.152798749 - - DWNN domain isoform 2 [Theobroma cacao]
17 Hb_000164_160 0.1532139565 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
18 Hb_008637_020 0.1534358646 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000836_160 0.1552100927 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
20 Hb_000260_300 0.1552735025 - - calcium binding protein/cast, putative [Ricinus communis]

Gene co-expression network

sample Hb_101058_020 Hb_101058_020 Hb_158926_010 Hb_158926_010 Hb_101058_020--Hb_158926_010 Hb_007894_020 Hb_007894_020 Hb_101058_020--Hb_007894_020 Hb_022137_020 Hb_022137_020 Hb_101058_020--Hb_022137_020 Hb_000665_090 Hb_000665_090 Hb_101058_020--Hb_000665_090 Hb_001894_060 Hb_001894_060 Hb_101058_020--Hb_001894_060 Hb_004079_040 Hb_004079_040 Hb_101058_020--Hb_004079_040 Hb_158926_010--Hb_001894_060 Hb_000808_090 Hb_000808_090 Hb_158926_010--Hb_000808_090 Hb_158926_010--Hb_022137_020 Hb_158926_010--Hb_004079_040 Hb_158926_010--Hb_000665_090 Hb_007894_020--Hb_022137_020 Hb_007894_020--Hb_158926_010 Hb_002542_030 Hb_002542_030 Hb_007894_020--Hb_002542_030 Hb_155946_030 Hb_155946_030 Hb_007894_020--Hb_155946_030 Hb_124677_020 Hb_124677_020 Hb_007894_020--Hb_124677_020 Hb_022137_020--Hb_002542_030 Hb_022137_020--Hb_124677_020 Hb_001999_170 Hb_001999_170 Hb_022137_020--Hb_001999_170 Hb_002066_050 Hb_002066_050 Hb_000665_090--Hb_002066_050 Hb_000714_080 Hb_000714_080 Hb_000665_090--Hb_000714_080 Hb_000665_090--Hb_000808_090 Hb_000925_110 Hb_000925_110 Hb_000665_090--Hb_000925_110 Hb_000904_110 Hb_000904_110 Hb_000665_090--Hb_000904_110 Hb_007441_150 Hb_007441_150 Hb_001894_060--Hb_007441_150 Hb_001894_060--Hb_000808_090 Hb_029622_080 Hb_029622_080 Hb_001894_060--Hb_029622_080 Hb_032260_100 Hb_032260_100 Hb_001894_060--Hb_032260_100 Hb_000358_170 Hb_000358_170 Hb_004079_040--Hb_000358_170 Hb_004079_040--Hb_001894_060 Hb_000127_200 Hb_000127_200 Hb_004079_040--Hb_000127_200 Hb_004079_040--Hb_000665_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105036 10.9378 7.16495 5.56425 0.119163 0.0352979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.253615 0.532094 0.0835799 0.0972324 0.186189

CAGE analysis