Hb_007894_020

Information

Type -
Description -
Location Contig7894: 28824-29162
Sequence    

Annotation

kegg
ID sot:102580608
description protein translation factor SUI1 homolog
nr
ID NP_001295722.1
description protein translation factor SUI1 homolog 2 [Jatropha curcas]
swissprot
ID Q94JV4
description Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=3 SV=1
trembl
ID D6BR70
description Translation initiation factor-like protein OS=Jatropha curcas GN=JCGZ_00890 PE=2 SV=1
Gene Ontology
ID GO:0003743
description translation factor sui1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58250: 28542-29445 , PASA_asmbl_58251: 28579-28815
cDNA
(Sanger)
(ID:Location)		 026_M15.ab1: 28543-29349 , 039_O20.ab1: 28542-29403

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_020 0.0 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
2 Hb_101058_020 0.0743176371 - - DWNN domain isoform 2 [Theobroma cacao]
3 Hb_022137_020 0.0944728312 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
4 Hb_158926_010 0.1260429929 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
5 Hb_002542_030 0.1370606644 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
6 Hb_155946_030 0.1384806759 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
7 Hb_124677_020 0.1390940199 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
8 Hb_008637_020 0.1417747274 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000260_300 0.1454782051 - - calcium binding protein/cast, putative [Ricinus communis]
10 Hb_000164_160 0.1458334221 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
11 Hb_002133_010 0.1482581532 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
12 Hb_000665_090 0.1522907869 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008406_080 0.1533312187 - - Nonspecific lipid-transfer protein 3 precursor, putative [Ricinus communis]
14 Hb_002007_070 0.1548501384 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
15 Hb_002982_030 0.160209785 - - Chalcone synthase, putative [Ricinus communis]
16 Hb_000336_060 0.1603192211 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
17 Hb_001999_170 0.1622912931 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
18 Hb_000808_090 0.1626208011 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
19 Hb_004079_040 0.1646701584 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
20 Hb_000836_160 0.1656210385 - - hypothetical protein JCGZ_14366 [Jatropha curcas]

Gene co-expression network

sample Hb_007894_020 Hb_007894_020 Hb_101058_020 Hb_101058_020 Hb_007894_020--Hb_101058_020 Hb_022137_020 Hb_022137_020 Hb_007894_020--Hb_022137_020 Hb_158926_010 Hb_158926_010 Hb_007894_020--Hb_158926_010 Hb_002542_030 Hb_002542_030 Hb_007894_020--Hb_002542_030 Hb_155946_030 Hb_155946_030 Hb_007894_020--Hb_155946_030 Hb_124677_020 Hb_124677_020 Hb_007894_020--Hb_124677_020 Hb_101058_020--Hb_158926_010 Hb_101058_020--Hb_022137_020 Hb_000665_090 Hb_000665_090 Hb_101058_020--Hb_000665_090 Hb_001894_060 Hb_001894_060 Hb_101058_020--Hb_001894_060 Hb_004079_040 Hb_004079_040 Hb_101058_020--Hb_004079_040 Hb_022137_020--Hb_158926_010 Hb_022137_020--Hb_002542_030 Hb_022137_020--Hb_124677_020 Hb_001999_170 Hb_001999_170 Hb_022137_020--Hb_001999_170 Hb_158926_010--Hb_001894_060 Hb_000808_090 Hb_000808_090 Hb_158926_010--Hb_000808_090 Hb_158926_010--Hb_004079_040 Hb_158926_010--Hb_000665_090 Hb_000164_160 Hb_000164_160 Hb_002542_030--Hb_000164_160 Hb_005054_330 Hb_005054_330 Hb_002542_030--Hb_005054_330 Hb_008637_020 Hb_008637_020 Hb_002542_030--Hb_008637_020 Hb_003207_230 Hb_003207_230 Hb_002542_030--Hb_003207_230 Hb_099188_010 Hb_099188_010 Hb_002542_030--Hb_099188_010 Hb_124953_010 Hb_124953_010 Hb_002542_030--Hb_124953_010 Hb_001579_070 Hb_001579_070 Hb_155946_030--Hb_001579_070 Hb_000162_130 Hb_000162_130 Hb_155946_030--Hb_000162_130 Hb_155946_030--Hb_124677_020 Hb_000260_300 Hb_000260_300 Hb_155946_030--Hb_000260_300 Hb_031108_010 Hb_031108_010 Hb_155946_030--Hb_031108_010 Hb_000336_060 Hb_000336_060 Hb_124677_020--Hb_000336_060 Hb_124677_020--Hb_000260_300 Hb_002151_130 Hb_002151_130 Hb_124677_020--Hb_002151_130 Hb_124677_020--Hb_001999_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9439 1379.62 1084.36 598.921 13.4155 2.92717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.8363 93.8803 25.5667 9.19269 4.71425

CAGE analysis