Hb_008637_020

Information

Type -
Description -
Location Contig8637: 19486-20187
Sequence    

Annotation

kegg
ID rcu:RCOM_1021590
description hypothetical protein
nr
ID XP_002518141.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RWM2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1021590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008637_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_128851_020 0.0879901586 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_099188_010 0.0908382308 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
4 Hb_002289_180 0.0933142907 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Nelumbo nucifera]
5 Hb_164577_010 0.0936681494 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
6 Hb_002542_030 0.0945983438 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
7 Hb_001511_200 0.0972822482 - - Embryonic abundant protein, putative [Ricinus communis]
8 Hb_007546_010 0.0982310288 - - unnamed protein product [Vitis vinifera]
9 Hb_000164_160 0.0998275845 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
10 Hb_000997_130 0.1027668864 - - DNA binding protein, putative [Ricinus communis]
11 Hb_000819_020 0.1152655618 - - hypothetical protein PRUPE_ppa020290mg, partial [Prunus persica]
12 Hb_001677_140 0.1170298132 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
13 Hb_046610_010 0.1226056732 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_110356_010 0.1241292476 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
15 Hb_002548_030 0.1241491991 - - PREDICTED: uncharacterized protein LOC103343650 [Prunus mume]
16 Hb_002066_050 0.125223183 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
17 Hb_000359_230 0.1257321064 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
18 Hb_112703_010 0.1273007907 - - PREDICTED: cytochrome P450 CYP72A219-like [Prunus mume]
19 Hb_034581_010 0.1281341303 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
20 Hb_010477_020 0.1282483622 - - hypothetical protein JCGZ_23768 [Jatropha curcas]

Gene co-expression network

sample Hb_008637_020 Hb_008637_020 Hb_128851_020 Hb_128851_020 Hb_008637_020--Hb_128851_020 Hb_099188_010 Hb_099188_010 Hb_008637_020--Hb_099188_010 Hb_002289_180 Hb_002289_180 Hb_008637_020--Hb_002289_180 Hb_164577_010 Hb_164577_010 Hb_008637_020--Hb_164577_010 Hb_002542_030 Hb_002542_030 Hb_008637_020--Hb_002542_030 Hb_001511_200 Hb_001511_200 Hb_008637_020--Hb_001511_200 Hb_128851_020--Hb_001511_200 Hb_001677_140 Hb_001677_140 Hb_128851_020--Hb_001677_140 Hb_128851_020--Hb_099188_010 Hb_110356_010 Hb_110356_010 Hb_128851_020--Hb_110356_010 Hb_002548_030 Hb_002548_030 Hb_128851_020--Hb_002548_030 Hb_000359_230 Hb_000359_230 Hb_128851_020--Hb_000359_230 Hb_099188_010--Hb_002548_030 Hb_099188_010--Hb_000359_230 Hb_099188_010--Hb_110356_010 Hb_099188_010--Hb_001677_140 Hb_034581_010 Hb_034581_010 Hb_099188_010--Hb_034581_010 Hb_112703_010 Hb_112703_010 Hb_002289_180--Hb_112703_010 Hb_000997_130 Hb_000997_130 Hb_002289_180--Hb_000997_130 Hb_032071_010 Hb_032071_010 Hb_002289_180--Hb_032071_010 Hb_008651_010 Hb_008651_010 Hb_002289_180--Hb_008651_010 Hb_002289_180--Hb_099188_010 Hb_046610_010 Hb_046610_010 Hb_164577_010--Hb_046610_010 Hb_164577_010--Hb_000997_130 Hb_007546_010 Hb_007546_010 Hb_164577_010--Hb_007546_010 Hb_164577_010--Hb_002289_180 Hb_000819_020 Hb_000819_020 Hb_164577_010--Hb_000819_020 Hb_000164_160 Hb_000164_160 Hb_002542_030--Hb_000164_160 Hb_005054_330 Hb_005054_330 Hb_002542_030--Hb_005054_330 Hb_003207_230 Hb_003207_230 Hb_002542_030--Hb_003207_230 Hb_002542_030--Hb_099188_010 Hb_124953_010 Hb_124953_010 Hb_002542_030--Hb_124953_010 Hb_001511_200--Hb_001677_140 Hb_010136_020 Hb_010136_020 Hb_001511_200--Hb_010136_020 Hb_002006_110 Hb_002006_110 Hb_001511_200--Hb_002006_110 Hb_001511_200--Hb_099188_010 Hb_000668_220 Hb_000668_220 Hb_001511_200--Hb_000668_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0394875 5.42732 4.30432 2.14433 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0718808 0 0 0

CAGE analysis