Hb_000997_130

Information

Type -
Description -
Location Contig997: 134773-135787
Sequence    

Annotation

kegg
ID rcu:RCOM_0909000
description DNA binding protein, putative
nr
ID XP_002517016.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9FIX5
description Transcription factor bHLH92 OS=Arabidopsis thaliana GN=BHLH92 PE=2 SV=1
trembl
ID B9RTE7
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0909000 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh92

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_130 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_002289_180 0.0696621251 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Nelumbo nucifera]
3 Hb_046610_010 0.0800126133 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_164577_010 0.0817818342 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_007546_010 0.0838985564 - - unnamed protein product [Vitis vinifera]
6 Hb_000164_160 0.1003622735 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
7 Hb_010223_010 0.1022730178 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
8 Hb_008637_020 0.1027668864 - - conserved hypothetical protein [Ricinus communis]
9 Hb_032071_010 0.103341391 - - hypothetical protein EUGRSUZ_J02969 [Eucalyptus grandis]
10 Hb_012400_020 0.1040460712 - - Spotted leaf protein, putative [Ricinus communis]
11 Hb_112703_010 0.1047939249 - - PREDICTED: cytochrome P450 CYP72A219-like [Prunus mume]
12 Hb_008651_010 0.1130584794 - - cytochrome P450, putative [Ricinus communis]
13 Hb_002133_010 0.1174231822 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
14 Hb_000592_070 0.1175116006 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
15 Hb_004899_010 0.12193757 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
16 Hb_000192_030 0.1285644275 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
17 Hb_000819_020 0.1307332363 - - hypothetical protein PRUPE_ppa020290mg, partial [Prunus persica]
18 Hb_010994_020 0.1331928828 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
19 Hb_000069_530 0.134196575 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
20 Hb_100395_010 0.1367602167 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000997_130 Hb_000997_130 Hb_002289_180 Hb_002289_180 Hb_000997_130--Hb_002289_180 Hb_046610_010 Hb_046610_010 Hb_000997_130--Hb_046610_010 Hb_164577_010 Hb_164577_010 Hb_000997_130--Hb_164577_010 Hb_007546_010 Hb_007546_010 Hb_000997_130--Hb_007546_010 Hb_000164_160 Hb_000164_160 Hb_000997_130--Hb_000164_160 Hb_010223_010 Hb_010223_010 Hb_000997_130--Hb_010223_010 Hb_112703_010 Hb_112703_010 Hb_002289_180--Hb_112703_010 Hb_032071_010 Hb_032071_010 Hb_002289_180--Hb_032071_010 Hb_008651_010 Hb_008651_010 Hb_002289_180--Hb_008651_010 Hb_099188_010 Hb_099188_010 Hb_002289_180--Hb_099188_010 Hb_008637_020 Hb_008637_020 Hb_002289_180--Hb_008637_020 Hb_054165_010 Hb_054165_010 Hb_046610_010--Hb_054165_010 Hb_046610_010--Hb_164577_010 Hb_001002_020 Hb_001002_020 Hb_046610_010--Hb_001002_020 Hb_046610_010--Hb_007546_010 Hb_021142_030 Hb_021142_030 Hb_046610_010--Hb_021142_030 Hb_164577_010--Hb_007546_010 Hb_164577_010--Hb_008637_020 Hb_164577_010--Hb_002289_180 Hb_000819_020 Hb_000819_020 Hb_164577_010--Hb_000819_020 Hb_002066_050 Hb_002066_050 Hb_007546_010--Hb_002066_050 Hb_001511_200 Hb_001511_200 Hb_007546_010--Hb_001511_200 Hb_007546_010--Hb_008637_020 Hb_005054_330 Hb_005054_330 Hb_000164_160--Hb_005054_330 Hb_002542_030 Hb_002542_030 Hb_000164_160--Hb_002542_030 Hb_004899_010 Hb_004899_010 Hb_000164_160--Hb_004899_010 Hb_000164_160--Hb_002289_180 Hb_000627_130 Hb_000627_130 Hb_000164_160--Hb_000627_130 Hb_000164_160--Hb_008637_020 Hb_107174_010 Hb_107174_010 Hb_010223_010--Hb_107174_010 Hb_000192_030 Hb_000192_030 Hb_010223_010--Hb_000192_030 Hb_010223_010--Hb_008651_010 Hb_002999_150 Hb_002999_150 Hb_010223_010--Hb_002999_150 Hb_010223_010--Hb_032071_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0432464 43.4387 51.0554 17.8319 0.12876 0.0304127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.062243 0 0.025308 0.123337

CAGE analysis