Hb_004899_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig4899: 4319-4912
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14100g
description AP2 domain-containing transcription factor family protein
nr
ID XP_012077091.1
description PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
swissprot
ID Q84QC2
description Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1
trembl
ID A0A067KCS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07518 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor erf017-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_010 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
2 Hb_000164_160 0.0807031679 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
3 Hb_004612_020 0.0847085361 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
4 Hb_005054_330 0.106786746 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
5 Hb_001153_250 0.115365112 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
6 Hb_000959_240 0.1195246857 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
7 Hb_008651_010 0.1207924502 - - cytochrome P450, putative [Ricinus communis]
8 Hb_000627_130 0.1210163745 - - Polcalcin Jun o, putative [Ricinus communis]
9 Hb_000997_130 0.12193757 - - DNA binding protein, putative [Ricinus communis]
10 Hb_112703_010 0.1248602574 - - PREDICTED: cytochrome P450 CYP72A219-like [Prunus mume]
11 Hb_120011_010 0.1249999075 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_001310_010 0.1278190581 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
13 Hb_002289_180 0.1287967215 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Nelumbo nucifera]
14 Hb_001999_170 0.1293404118 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
15 Hb_000592_070 0.1317739952 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
16 Hb_002133_010 0.1331808587 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
17 Hb_005381_010 0.1336894816 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
18 Hb_008725_220 0.1344126427 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
19 Hb_032071_010 0.1354017372 - - hypothetical protein EUGRSUZ_J02969 [Eucalyptus grandis]
20 Hb_007858_020 0.1360584073 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]

Gene co-expression network

sample Hb_004899_010 Hb_004899_010 Hb_000164_160 Hb_000164_160 Hb_004899_010--Hb_000164_160 Hb_004612_020 Hb_004612_020 Hb_004899_010--Hb_004612_020 Hb_005054_330 Hb_005054_330 Hb_004899_010--Hb_005054_330 Hb_001153_250 Hb_001153_250 Hb_004899_010--Hb_001153_250 Hb_000959_240 Hb_000959_240 Hb_004899_010--Hb_000959_240 Hb_008651_010 Hb_008651_010 Hb_004899_010--Hb_008651_010 Hb_000164_160--Hb_005054_330 Hb_002542_030 Hb_002542_030 Hb_000164_160--Hb_002542_030 Hb_002289_180 Hb_002289_180 Hb_000164_160--Hb_002289_180 Hb_000627_130 Hb_000627_130 Hb_000164_160--Hb_000627_130 Hb_008637_020 Hb_008637_020 Hb_000164_160--Hb_008637_020 Hb_004612_020--Hb_000164_160 Hb_001310_010 Hb_001310_010 Hb_004612_020--Hb_001310_010 Hb_005381_010 Hb_005381_010 Hb_004612_020--Hb_005381_010 Hb_000069_530 Hb_000069_530 Hb_004612_020--Hb_000069_530 Hb_004612_020--Hb_000627_130 Hb_007858_020 Hb_007858_020 Hb_005054_330--Hb_007858_020 Hb_167186_010 Hb_167186_010 Hb_005054_330--Hb_167186_010 Hb_005054_330--Hb_000959_240 Hb_008725_220 Hb_008725_220 Hb_005054_330--Hb_008725_220 Hb_003207_230 Hb_003207_230 Hb_005054_330--Hb_003207_230 Hb_029664_010 Hb_029664_010 Hb_001153_250--Hb_029664_010 Hb_001153_250--Hb_000627_130 Hb_006615_060 Hb_006615_060 Hb_001153_250--Hb_006615_060 Hb_001153_250--Hb_000959_240 Hb_001153_250--Hb_007858_020 Hb_001153_250--Hb_003207_230 Hb_000959_240--Hb_008725_220 Hb_000959_240--Hb_007858_020 Hb_000959_240--Hb_167186_010 Hb_101437_010 Hb_101437_010 Hb_000959_240--Hb_101437_010 Hb_000025_490 Hb_000025_490 Hb_000959_240--Hb_000025_490 Hb_179363_010 Hb_179363_010 Hb_008651_010--Hb_179363_010 Hb_112703_010 Hb_112703_010 Hb_008651_010--Hb_112703_010 Hb_008651_010--Hb_002289_180 Hb_032071_010 Hb_032071_010 Hb_008651_010--Hb_032071_010 Hb_010223_010 Hb_010223_010 Hb_008651_010--Hb_010223_010 Hb_000433_050 Hb_000433_050 Hb_008651_010--Hb_000433_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.813009 215.979 221.994 53.8721 0.387898 0.737144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53751 2.65831 1.96948 0.231387 7.00376

CAGE analysis