Hb_029664_010

Information

Type -
Description -
Location Contig29664: 13818-15958
Sequence    

Annotation

kegg
ID rcu:RCOM_0605720
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002529807.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9ASS4
description Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1
trembl
ID B9SUY8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0605720 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probably inactive leucine-rich repeat receptor-like protein kinase at5g48380

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029664_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_001153_250 0.0796336576 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
3 Hb_000627_130 0.0874540017 - - Polcalcin Jun o, putative [Ricinus communis]
4 Hb_006907_020 0.1139313507 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
5 Hb_007858_020 0.1165627537 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
6 Hb_008202_020 0.1210251002 - - receptor serine/threonine kinase, putative [Ricinus communis]
7 Hb_124953_010 0.1232870431 - - hypothetical protein RCOM_1314600 [Ricinus communis]
8 Hb_001619_140 0.126659047 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
9 Hb_003207_230 0.1288694664 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
10 Hb_004899_360 0.1312906078 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
11 Hb_097007_020 0.1316479137 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
12 Hb_012496_010 0.1326224731 - - kinase, putative [Ricinus communis]
13 Hb_109591_010 0.1328081662 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_006615_060 0.1357212835 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004032_220 0.1361052035 - - Calmodulin, putative [Ricinus communis]
16 Hb_000959_240 0.1416747361 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
17 Hb_000656_350 0.1426754236 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
18 Hb_182167_010 0.1436900368 - - hypothetical protein PHAVU_001G0486001g, partial [Phaseolus vulgaris]
19 Hb_010964_010 0.143778664 - - -
20 Hb_005054_330 0.1447285344 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]

Gene co-expression network

sample Hb_029664_010 Hb_029664_010 Hb_001153_250 Hb_001153_250 Hb_029664_010--Hb_001153_250 Hb_000627_130 Hb_000627_130 Hb_029664_010--Hb_000627_130 Hb_006907_020 Hb_006907_020 Hb_029664_010--Hb_006907_020 Hb_007858_020 Hb_007858_020 Hb_029664_010--Hb_007858_020 Hb_008202_020 Hb_008202_020 Hb_029664_010--Hb_008202_020 Hb_124953_010 Hb_124953_010 Hb_029664_010--Hb_124953_010 Hb_001153_250--Hb_000627_130 Hb_006615_060 Hb_006615_060 Hb_001153_250--Hb_006615_060 Hb_000959_240 Hb_000959_240 Hb_001153_250--Hb_000959_240 Hb_001153_250--Hb_007858_020 Hb_003207_230 Hb_003207_230 Hb_001153_250--Hb_003207_230 Hb_000627_130--Hb_007858_020 Hb_000627_130--Hb_124953_010 Hb_109591_010 Hb_109591_010 Hb_000627_130--Hb_109591_010 Hb_005054_330 Hb_005054_330 Hb_000627_130--Hb_005054_330 Hb_012496_010 Hb_012496_010 Hb_006907_020--Hb_012496_010 Hb_097007_020 Hb_097007_020 Hb_006907_020--Hb_097007_020 Hb_035677_010 Hb_035677_010 Hb_006907_020--Hb_035677_010 Hb_001004_010 Hb_001004_010 Hb_006907_020--Hb_001004_010 Hb_004899_360 Hb_004899_360 Hb_006907_020--Hb_004899_360 Hb_007858_020--Hb_005054_330 Hb_004032_220 Hb_004032_220 Hb_007858_020--Hb_004032_220 Hb_007858_020--Hb_124953_010 Hb_007858_020--Hb_000959_240 Hb_000032_150 Hb_000032_150 Hb_007858_020--Hb_000032_150 Hb_167186_010 Hb_167186_010 Hb_007858_020--Hb_167186_010 Hb_008202_020--Hb_004899_360 Hb_001619_140 Hb_001619_140 Hb_008202_020--Hb_001619_140 Hb_002010_020 Hb_002010_020 Hb_008202_020--Hb_002010_020 Hb_004109_240 Hb_004109_240 Hb_008202_020--Hb_004109_240 Hb_154466_010 Hb_154466_010 Hb_008202_020--Hb_154466_010 Hb_121540_010 Hb_121540_010 Hb_008202_020--Hb_121540_010 Hb_124953_010--Hb_003207_230 Hb_124953_010--Hb_000032_150 Hb_124953_010--Hb_005054_330 Hb_047955_010 Hb_047955_010 Hb_124953_010--Hb_047955_010 Hb_124953_010--Hb_004032_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.346782 0.212503 0.0737712 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0405955

CAGE analysis