Hb_001004_010

Information

Type -
Description -
Location Contig1004: 64629-65831
Sequence    

Annotation

kegg
ID rcu:RCOM_1447680
description hypothetical protein
nr
ID XP_002512931.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SU30
description F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2
trembl
ID B9RH72
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1447680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001004_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012496_010 0.1140311196 - - kinase, putative [Ricinus communis]
3 Hb_008143_020 0.1145682764 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
4 Hb_113396_020 0.1183582327 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
5 Hb_006907_020 0.1248487636 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
6 Hb_000422_050 0.1311564334 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
7 Hb_000340_060 0.1328200042 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003375_080 0.1348877934 - - PREDICTED: uncharacterized protein LOC105643382 isoform X1 [Jatropha curcas]
9 Hb_000127_220 0.136569464 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
10 Hb_006873_030 0.137979551 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_002849_030 0.1423341384 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
12 Hb_002973_040 0.1427514927 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
13 Hb_000247_150 0.1449931949 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
14 Hb_035677_010 0.1451155756 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000465_100 0.1477561956 - - catalytic, putative [Ricinus communis]
16 Hb_039650_030 0.1507649581 - - hypothetical protein RCOM_2128750 [Ricinus communis]
17 Hb_000175_250 0.1507742858 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
18 Hb_000836_310 0.1521390904 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
19 Hb_004924_030 0.1562529429 - - -
20 Hb_097007_020 0.1566582949 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]

Gene co-expression network

sample Hb_001004_010 Hb_001004_010 Hb_012496_010 Hb_012496_010 Hb_001004_010--Hb_012496_010 Hb_008143_020 Hb_008143_020 Hb_001004_010--Hb_008143_020 Hb_113396_020 Hb_113396_020 Hb_001004_010--Hb_113396_020 Hb_006907_020 Hb_006907_020 Hb_001004_010--Hb_006907_020 Hb_000422_050 Hb_000422_050 Hb_001004_010--Hb_000422_050 Hb_000340_060 Hb_000340_060 Hb_001004_010--Hb_000340_060 Hb_035677_010 Hb_035677_010 Hb_012496_010--Hb_035677_010 Hb_012496_010--Hb_113396_020 Hb_000836_310 Hb_000836_310 Hb_012496_010--Hb_000836_310 Hb_000127_220 Hb_000127_220 Hb_012496_010--Hb_000127_220 Hb_012496_010--Hb_006907_020 Hb_012496_010--Hb_000422_050 Hb_008143_020--Hb_000340_060 Hb_097007_020 Hb_097007_020 Hb_008143_020--Hb_097007_020 Hb_008143_020--Hb_012496_010 Hb_008143_020--Hb_006907_020 Hb_008143_020--Hb_000422_050 Hb_048538_010 Hb_048538_010 Hb_113396_020--Hb_048538_010 Hb_002849_030 Hb_002849_030 Hb_113396_020--Hb_002849_030 Hb_113396_020--Hb_000422_050 Hb_008897_020 Hb_008897_020 Hb_113396_020--Hb_008897_020 Hb_113396_020--Hb_000127_220 Hb_006907_020--Hb_097007_020 Hb_029664_010 Hb_029664_010 Hb_006907_020--Hb_029664_010 Hb_006907_020--Hb_035677_010 Hb_004899_360 Hb_004899_360 Hb_006907_020--Hb_004899_360 Hb_000322_020 Hb_000322_020 Hb_000422_050--Hb_000322_020 Hb_001257_040 Hb_001257_040 Hb_000422_050--Hb_001257_040 Hb_004586_120 Hb_004586_120 Hb_000422_050--Hb_004586_120 Hb_000422_050--Hb_002849_030 Hb_000422_050--Hb_000127_220 Hb_000340_060--Hb_001257_040 Hb_000340_060--Hb_000836_310 Hb_004032_220 Hb_004032_220 Hb_000340_060--Hb_004032_220 Hb_000340_060--Hb_000127_220 Hb_007858_020 Hb_007858_020 Hb_000340_060--Hb_007858_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0531318 6.84869 1.79385 0.64575 0.033186 0.0933825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0404494 0 0 0.0127454 0.790304

CAGE analysis