Hb_001619_140

Information

Type -
Description -
Location Contig1619: 140378-142816
Sequence    

Annotation

kegg
ID rcu:RCOM_1034650
description trehalose-6-phosphate synthase, putative (EC:3.1.3.12)
nr
ID XP_002513897.1
description trehalose-6-phosphate synthase, putative [Ricinus communis]
swissprot
ID Q67XC9
description Probable trehalose-phosphate phosphatase D OS=Arabidopsis thaliana GN=TPPD PE=2 SV=1
trembl
ID B9RJH8
description Trehalose 6-phosphate phosphatase OS=Ricinus communis GN=RCOM_1034650 PE=3 SV=1
Gene Ontology
ID GO:0004805
description probable trehalose-phosphate phosphatase d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14545: 140254-142801 , PASA_asmbl_14546: 142174-142626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001619_140 0.0 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
2 Hb_008202_020 0.0730950041 - - receptor serine/threonine kinase, putative [Ricinus communis]
3 Hb_154466_010 0.0885021098 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
4 Hb_120011_010 0.0885216069 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_000571_030 0.093828831 - - ammonium transporter, putative [Ricinus communis]
6 Hb_004899_360 0.0972650089 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
7 Hb_007858_020 0.0978575537 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
8 Hb_004109_240 0.0982776599 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
9 Hb_002010_020 0.1002840783 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
10 Hb_000627_130 0.111412928 - - Polcalcin Jun o, putative [Ricinus communis]
11 Hb_002471_190 0.113322212 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
12 Hb_002391_020 0.1180229285 transcription factor TF Family: NAC PREDICTED: putative NAC domain-containing protein 94 [Jatropha curcas]
13 Hb_005054_330 0.1192372356 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
14 Hb_010964_010 0.1214582173 - - -
15 Hb_121540_010 0.121705498 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]
16 Hb_074672_010 0.1218920267 - - receptor serine/threonine kinase, putative [Ricinus communis]
17 Hb_167186_010 0.1230681027 - - cation-transporting atpase plant, putative [Ricinus communis]
18 Hb_001310_010 0.1232673911 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
19 Hb_017693_040 0.1241197501 - - tyrosine kinase family protein [Medicago truncatula]
20 Hb_000656_350 0.1243310407 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001619_140 Hb_001619_140 Hb_008202_020 Hb_008202_020 Hb_001619_140--Hb_008202_020 Hb_154466_010 Hb_154466_010 Hb_001619_140--Hb_154466_010 Hb_120011_010 Hb_120011_010 Hb_001619_140--Hb_120011_010 Hb_000571_030 Hb_000571_030 Hb_001619_140--Hb_000571_030 Hb_004899_360 Hb_004899_360 Hb_001619_140--Hb_004899_360 Hb_007858_020 Hb_007858_020 Hb_001619_140--Hb_007858_020 Hb_008202_020--Hb_004899_360 Hb_002010_020 Hb_002010_020 Hb_008202_020--Hb_002010_020 Hb_004109_240 Hb_004109_240 Hb_008202_020--Hb_004109_240 Hb_008202_020--Hb_154466_010 Hb_121540_010 Hb_121540_010 Hb_008202_020--Hb_121540_010 Hb_154466_010--Hb_002010_020 Hb_002471_190 Hb_002471_190 Hb_154466_010--Hb_002471_190 Hb_002391_020 Hb_002391_020 Hb_154466_010--Hb_002391_020 Hb_158111_010 Hb_158111_010 Hb_154466_010--Hb_158111_010 Hb_074672_010 Hb_074672_010 Hb_120011_010--Hb_074672_010 Hb_001310_010 Hb_001310_010 Hb_120011_010--Hb_001310_010 Hb_077694_010 Hb_077694_010 Hb_120011_010--Hb_077694_010 Hb_120011_010--Hb_008202_020 Hb_006615_060 Hb_006615_060 Hb_120011_010--Hb_006615_060 Hb_000656_350 Hb_000656_350 Hb_000571_030--Hb_000656_350 Hb_000032_150 Hb_000032_150 Hb_000571_030--Hb_000032_150 Hb_001257_040 Hb_001257_040 Hb_000571_030--Hb_001257_040 Hb_000571_030--Hb_007858_020 Hb_029622_080 Hb_029622_080 Hb_000571_030--Hb_029622_080 Hb_004899_360--Hb_004109_240 Hb_008810_030 Hb_008810_030 Hb_004899_360--Hb_008810_030 Hb_097007_020 Hb_097007_020 Hb_004899_360--Hb_097007_020 Hb_004899_360--Hb_002010_020 Hb_005054_330 Hb_005054_330 Hb_007858_020--Hb_005054_330 Hb_004032_220 Hb_004032_220 Hb_007858_020--Hb_004032_220 Hb_124953_010 Hb_124953_010 Hb_007858_020--Hb_124953_010 Hb_000959_240 Hb_000959_240 Hb_007858_020--Hb_000959_240 Hb_007858_020--Hb_000032_150 Hb_167186_010 Hb_167186_010 Hb_007858_020--Hb_167186_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.020246 46.8129 29.3982 9.89429 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0370938 0.0583602 0 2.28804 3.03162

CAGE analysis