Hb_002471_190

Information

Type -
Description -
Location Contig2471: 171637-172968
Sequence    

Annotation

kegg
ID rcu:RCOM_1149010
description Spotted leaf protein, putative
nr
ID XP_012072358.1
description PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
swissprot
ID Q5PNY6
description U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1
trembl
ID A0A067L249
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04802 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 21-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25662: 171543-173034
cDNA
(Sanger)
(ID:Location)		 033_L09.ab1: 172321-173034

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_190 0.0 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
2 Hb_154466_010 0.0730569162 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
3 Hb_002010_020 0.0911637729 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
4 Hb_001635_230 0.0918353815 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_000087_200 0.0934796273 - - PREDICTED: uncharacterized protein LOC105641954 [Jatropha curcas]
6 Hb_004109_240 0.1043768423 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
7 Hb_158111_010 0.1123607392 - - S-locus-specific glycoprotein precursor, putative [Ricinus communis]
8 Hb_001619_140 0.113322212 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
9 Hb_002391_020 0.113976967 transcription factor TF Family: NAC PREDICTED: putative NAC domain-containing protein 94 [Jatropha curcas]
10 Hb_002615_010 0.1140233353 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
11 Hb_004899_360 0.1221224044 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
12 Hb_017693_040 0.1243925679 - - tyrosine kinase family protein [Medicago truncatula]
13 Hb_008202_020 0.1265045157 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_005357_270 0.1301041667 - - Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative [Ricinus communis]
15 Hb_000359_260 0.1308361088 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
16 Hb_028486_010 0.1345921657 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
17 Hb_012545_080 0.1363900552 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
18 Hb_008667_030 0.1385853703 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
19 Hb_001619_020 0.139647751 - - LRR receptor-like kinase family protein [Medicago truncatula]
20 Hb_006698_020 0.1397746563 - - hypothetical protein JCGZ_04585 [Jatropha curcas]

Gene co-expression network

sample Hb_002471_190 Hb_002471_190 Hb_154466_010 Hb_154466_010 Hb_002471_190--Hb_154466_010 Hb_002010_020 Hb_002010_020 Hb_002471_190--Hb_002010_020 Hb_001635_230 Hb_001635_230 Hb_002471_190--Hb_001635_230 Hb_000087_200 Hb_000087_200 Hb_002471_190--Hb_000087_200 Hb_004109_240 Hb_004109_240 Hb_002471_190--Hb_004109_240 Hb_158111_010 Hb_158111_010 Hb_002471_190--Hb_158111_010 Hb_154466_010--Hb_002010_020 Hb_002391_020 Hb_002391_020 Hb_154466_010--Hb_002391_020 Hb_001619_140 Hb_001619_140 Hb_154466_010--Hb_001619_140 Hb_008202_020 Hb_008202_020 Hb_154466_010--Hb_008202_020 Hb_154466_010--Hb_158111_010 Hb_002010_020--Hb_008202_020 Hb_002010_020--Hb_002391_020 Hb_004899_360 Hb_004899_360 Hb_002010_020--Hb_004899_360 Hb_002010_020--Hb_001619_140 Hb_002615_010 Hb_002615_010 Hb_001635_230--Hb_002615_010 Hb_017693_040 Hb_017693_040 Hb_001635_230--Hb_017693_040 Hb_000359_260 Hb_000359_260 Hb_001635_230--Hb_000359_260 Hb_001619_020 Hb_001619_020 Hb_001635_230--Hb_001619_020 Hb_001635_230--Hb_158111_010 Hb_028486_010 Hb_028486_010 Hb_000087_200--Hb_028486_010 Hb_000087_200--Hb_004109_240 Hb_000087_200--Hb_017693_040 Hb_121540_010 Hb_121540_010 Hb_000087_200--Hb_121540_010 Hb_021254_020 Hb_021254_020 Hb_000087_200--Hb_021254_020 Hb_004109_240--Hb_021254_020 Hb_004109_240--Hb_028486_010 Hb_004109_240--Hb_004899_360 Hb_004109_240--Hb_008202_020 Hb_004109_240--Hb_121540_010 Hb_158111_010--Hb_002391_020 Hb_158111_010--Hb_002615_010 Hb_158111_010--Hb_002010_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0157174 14.9663 8.99274 4.01862 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.46981 1.11507

CAGE analysis