Hb_000359_260

Information

Type -
Description -
Location Contig359: 254809-260743
Sequence    

Annotation

kegg
ID rcu:RCOM_0539370
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.25)
nr
ID XP_012070192.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
swissprot
ID Q8RWZ5
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1
trembl
ID B9SIR1
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_0539370 PE=3 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase sd2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37065: 255701-256216 , PASA_asmbl_37066: 257981-260391
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_260 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
2 Hb_002107_110 0.0978678371 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
3 Hb_001635_230 0.1037740314 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_017693_040 0.1066124746 - - tyrosine kinase family protein [Medicago truncatula]
5 Hb_154466_010 0.1184719449 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
6 Hb_077694_010 0.1243203703 - - uncharacterized protein LOC100305624 [Glycine max]
7 Hb_002010_020 0.1284450395 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
8 Hb_000836_420 0.1304039928 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_002471_190 0.1308361088 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
10 Hb_000087_200 0.1328042671 - - PREDICTED: uncharacterized protein LOC105641954 [Jatropha curcas]
11 Hb_001619_020 0.1347285205 - - LRR receptor-like kinase family protein [Medicago truncatula]
12 Hb_052434_010 0.1352065028 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Sesamum indicum]
13 Hb_000495_050 0.1352603377 - - hypothetical protein JCGZ_25174 [Jatropha curcas]
14 Hb_004109_240 0.1356393328 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
15 Hb_002615_010 0.1360767983 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
16 Hb_002391_020 0.1418185828 transcription factor TF Family: NAC PREDICTED: putative NAC domain-containing protein 94 [Jatropha curcas]
17 Hb_000031_160 0.1435730696 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
18 Hb_003077_060 0.1437842274 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
19 Hb_158111_010 0.1444660803 - - S-locus-specific glycoprotein precursor, putative [Ricinus communis]
20 Hb_004837_200 0.1452151586 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]

Gene co-expression network

sample Hb_000359_260 Hb_000359_260 Hb_002107_110 Hb_002107_110 Hb_000359_260--Hb_002107_110 Hb_001635_230 Hb_001635_230 Hb_000359_260--Hb_001635_230 Hb_017693_040 Hb_017693_040 Hb_000359_260--Hb_017693_040 Hb_154466_010 Hb_154466_010 Hb_000359_260--Hb_154466_010 Hb_077694_010 Hb_077694_010 Hb_000359_260--Hb_077694_010 Hb_002010_020 Hb_002010_020 Hb_000359_260--Hb_002010_020 Hb_003077_060 Hb_003077_060 Hb_002107_110--Hb_003077_060 Hb_092458_010 Hb_092458_010 Hb_002107_110--Hb_092458_010 Hb_000495_050 Hb_000495_050 Hb_002107_110--Hb_000495_050 Hb_002107_110--Hb_001635_230 Hb_002615_010 Hb_002615_010 Hb_002107_110--Hb_002615_010 Hb_001635_230--Hb_002615_010 Hb_002471_190 Hb_002471_190 Hb_001635_230--Hb_002471_190 Hb_001635_230--Hb_017693_040 Hb_001619_020 Hb_001619_020 Hb_001635_230--Hb_001619_020 Hb_158111_010 Hb_158111_010 Hb_001635_230--Hb_158111_010 Hb_017693_040--Hb_077694_010 Hb_121540_010 Hb_121540_010 Hb_017693_040--Hb_121540_010 Hb_000087_200 Hb_000087_200 Hb_017693_040--Hb_000087_200 Hb_012022_020 Hb_012022_020 Hb_017693_040--Hb_012022_020 Hb_154466_010--Hb_002010_020 Hb_154466_010--Hb_002471_190 Hb_002391_020 Hb_002391_020 Hb_154466_010--Hb_002391_020 Hb_001619_140 Hb_001619_140 Hb_154466_010--Hb_001619_140 Hb_008202_020 Hb_008202_020 Hb_154466_010--Hb_008202_020 Hb_154466_010--Hb_158111_010 Hb_077694_010--Hb_121540_010 Hb_005381_010 Hb_005381_010 Hb_077694_010--Hb_005381_010 Hb_000069_530 Hb_000069_530 Hb_077694_010--Hb_000069_530 Hb_001660_080 Hb_001660_080 Hb_077694_010--Hb_001660_080 Hb_120011_010 Hb_120011_010 Hb_077694_010--Hb_120011_010 Hb_002010_020--Hb_008202_020 Hb_002010_020--Hb_002471_190 Hb_002010_020--Hb_002391_020 Hb_004899_360 Hb_004899_360 Hb_002010_020--Hb_004899_360 Hb_002010_020--Hb_001619_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0321766 2.11749 2.24729 0.632222 0.01986 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00716704 0.0137909 0.42836 0.261635

CAGE analysis