Hb_002107_110

Information

Type -
Description -
Location Contig2107: 79079-81037
Sequence    

Annotation

kegg
ID rcu:RCOM_1599170
description alcohol dehydrogenase, putative (EC:1.1.1.255)
nr
ID XP_012073738.1
description PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
swissprot
ID Q7XWU3
description Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2
trembl
ID A0A067KX83
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08176 PE=3 SV=1
Gene Ontology
ID GO:0008270
description probable cinnamyl alcohol dehydrogenase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21813: 79144-80792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002107_110 0.0 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
2 Hb_003077_060 0.0887337735 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
3 Hb_000359_260 0.0978678371 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
4 Hb_092458_010 0.1064330574 - - calmodulin binding protein, putative [Ricinus communis]
5 Hb_000495_050 0.1083867329 - - hypothetical protein JCGZ_25174 [Jatropha curcas]
6 Hb_001635_230 0.11415404 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_002615_010 0.1187556079 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
8 Hb_001619_020 0.1293545055 - - LRR receptor-like kinase family protein [Medicago truncatula]
9 Hb_005867_030 0.1310684124 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
10 Hb_002010_020 0.1342971246 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
11 Hb_042098_010 0.1347364939 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
12 Hb_005814_010 0.1355690163 - - ATP binding protein, putative [Ricinus communis]
13 Hb_018633_010 0.1374029466 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
14 Hb_001581_040 0.1385982097 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_052434_010 0.1397790948 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Sesamum indicum]
16 Hb_000001_010 0.1408915842 - - PREDICTED: uncharacterized protein LOC105648961 [Jatropha curcas]
17 Hb_000111_240 0.1419002043 - - PREDICTED: glutamate receptor 2.8-like [Elaeis guineensis]
18 Hb_154466_010 0.1445955261 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
19 Hb_000031_160 0.1481654875 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
20 Hb_086614_010 0.1496041688 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002107_110 Hb_002107_110 Hb_003077_060 Hb_003077_060 Hb_002107_110--Hb_003077_060 Hb_000359_260 Hb_000359_260 Hb_002107_110--Hb_000359_260 Hb_092458_010 Hb_092458_010 Hb_002107_110--Hb_092458_010 Hb_000495_050 Hb_000495_050 Hb_002107_110--Hb_000495_050 Hb_001635_230 Hb_001635_230 Hb_002107_110--Hb_001635_230 Hb_002615_010 Hb_002615_010 Hb_002107_110--Hb_002615_010 Hb_003077_060--Hb_092458_010 Hb_005867_030 Hb_005867_030 Hb_003077_060--Hb_005867_030 Hb_007416_170 Hb_007416_170 Hb_003077_060--Hb_007416_170 Hb_001619_020 Hb_001619_020 Hb_003077_060--Hb_001619_020 Hb_000237_070 Hb_000237_070 Hb_003077_060--Hb_000237_070 Hb_000359_260--Hb_001635_230 Hb_017693_040 Hb_017693_040 Hb_000359_260--Hb_017693_040 Hb_154466_010 Hb_154466_010 Hb_000359_260--Hb_154466_010 Hb_077694_010 Hb_077694_010 Hb_000359_260--Hb_077694_010 Hb_002010_020 Hb_002010_020 Hb_000359_260--Hb_002010_020 Hb_005433_030 Hb_005433_030 Hb_092458_010--Hb_005433_030 Hb_092458_010--Hb_002615_010 Hb_018633_010 Hb_018633_010 Hb_092458_010--Hb_018633_010 Hb_092458_010--Hb_002010_020 Hb_005814_010 Hb_005814_010 Hb_000495_050--Hb_005814_010 Hb_000454_080 Hb_000454_080 Hb_000495_050--Hb_000454_080 Hb_000495_050--Hb_005867_030 Hb_000985_140 Hb_000985_140 Hb_000495_050--Hb_000985_140 Hb_002030_180 Hb_002030_180 Hb_000495_050--Hb_002030_180 Hb_001635_230--Hb_002615_010 Hb_002471_190 Hb_002471_190 Hb_001635_230--Hb_002471_190 Hb_001635_230--Hb_017693_040 Hb_001635_230--Hb_001619_020 Hb_158111_010 Hb_158111_010 Hb_001635_230--Hb_158111_010 Hb_002615_010--Hb_002471_190 Hb_002615_010--Hb_158111_010 Hb_002391_020 Hb_002391_020 Hb_002615_010--Hb_002391_020 Hb_002615_010--Hb_002010_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0874373 27.4708 30.534 6.06529 0.0308804 0.0654333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.18166 0.228649 0.0534076 8.17297 5.05242

CAGE analysis