Hb_007416_170

Information

Type transcription factor
Description TF Family: WRKY
Location Contig7416: 113904-115657
Sequence    

Annotation

kegg
ID tcc:TCM_036832
description WRKY protein isoform 1
nr
ID XP_012076351.1
description PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
swissprot
ID Q9SV15
description Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=2 SV=2
trembl
ID S5CKB9
description Uncharacterized protein OS=Jatropha curcas GN=WRKY43 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_170 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
2 Hb_003077_060 0.1110501066 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
3 Hb_002890_320 0.1175752193 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
4 Hb_004880_100 0.1286333076 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Glycine max]
5 Hb_005867_030 0.1310017751 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
6 Hb_004837_110 0.131143422 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
7 Hb_003029_010 0.1336055006 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
8 Hb_007102_010 0.1336279108 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
9 Hb_000985_140 0.1353059093 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
10 Hb_012098_180 0.1361942843 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
11 Hb_003905_040 0.1369579108 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
12 Hb_003529_230 0.1382882679 transcription factor TF Family: ERF -
13 Hb_001538_050 0.1396634033 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
14 Hb_008810_030 0.1404221318 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
15 Hb_003387_080 0.1423244049 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_004393_030 0.143929556 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
17 Hb_000237_070 0.144513543 - - Purple acid phosphatase precursor, putative [Ricinus communis]
18 Hb_002010_020 0.1447591958 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
19 Hb_005463_070 0.1459078358 - - calcium ion binding protein, putative [Ricinus communis]
20 Hb_007254_050 0.1467412251 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]

Gene co-expression network

sample Hb_007416_170 Hb_007416_170 Hb_003077_060 Hb_003077_060 Hb_007416_170--Hb_003077_060 Hb_002890_320 Hb_002890_320 Hb_007416_170--Hb_002890_320 Hb_004880_100 Hb_004880_100 Hb_007416_170--Hb_004880_100 Hb_005867_030 Hb_005867_030 Hb_007416_170--Hb_005867_030 Hb_004837_110 Hb_004837_110 Hb_007416_170--Hb_004837_110 Hb_003029_010 Hb_003029_010 Hb_007416_170--Hb_003029_010 Hb_002107_110 Hb_002107_110 Hb_003077_060--Hb_002107_110 Hb_092458_010 Hb_092458_010 Hb_003077_060--Hb_092458_010 Hb_003077_060--Hb_005867_030 Hb_001619_020 Hb_001619_020 Hb_003077_060--Hb_001619_020 Hb_000237_070 Hb_000237_070 Hb_003077_060--Hb_000237_070 Hb_002890_320--Hb_004837_110 Hb_007102_010 Hb_007102_010 Hb_002890_320--Hb_007102_010 Hb_005569_030 Hb_005569_030 Hb_002890_320--Hb_005569_030 Hb_000313_100 Hb_000313_100 Hb_002890_320--Hb_000313_100 Hb_012098_180 Hb_012098_180 Hb_002890_320--Hb_012098_180 Hb_002890_320--Hb_000237_070 Hb_000177_130 Hb_000177_130 Hb_004880_100--Hb_000177_130 Hb_013720_010 Hb_013720_010 Hb_004880_100--Hb_013720_010 Hb_000331_710 Hb_000331_710 Hb_004880_100--Hb_000331_710 Hb_002010_020 Hb_002010_020 Hb_004880_100--Hb_002010_020 Hb_000002_100 Hb_000002_100 Hb_004880_100--Hb_000002_100 Hb_000705_130 Hb_000705_130 Hb_004880_100--Hb_000705_130 Hb_005867_030--Hb_000237_070 Hb_005463_070 Hb_005463_070 Hb_005867_030--Hb_005463_070 Hb_005867_030--Hb_001619_020 Hb_000495_050 Hb_000495_050 Hb_005867_030--Hb_000495_050 Hb_000318_050 Hb_000318_050 Hb_005867_030--Hb_000318_050 Hb_004837_110--Hb_007102_010 Hb_000054_140 Hb_000054_140 Hb_004837_110--Hb_000054_140 Hb_001821_050 Hb_001821_050 Hb_004837_110--Hb_001821_050 Hb_028928_020 Hb_028928_020 Hb_004837_110--Hb_028928_020 Hb_002375_080 Hb_002375_080 Hb_004837_110--Hb_002375_080 Hb_000152_410 Hb_000152_410 Hb_003029_010--Hb_000152_410 Hb_029584_110 Hb_029584_110 Hb_003029_010--Hb_029584_110 Hb_002596_090 Hb_002596_090 Hb_003029_010--Hb_002596_090 Hb_003387_080 Hb_003387_080 Hb_003029_010--Hb_003387_080 Hb_029095_010 Hb_029095_010 Hb_003029_010--Hb_029095_010 Hb_005016_080 Hb_005016_080 Hb_003029_010--Hb_005016_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0427542 8.60776 5.80045 2.03406 0.129691 0.0536064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0573967 1.65286 2.5545

CAGE analysis