Hb_003077_060

Information

Type -
Description -
Location Contig3077: 114411-116336
Sequence    

Annotation

kegg
ID rcu:RCOM_0810770
description hypothetical protein
nr
ID XP_012093081.1
description PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
swissprot
ID Q9STX2
description 3-oxo-Delta(4,5)-steroid 5-beta-reductase OS=Arabidopsis thaliana GN=VEP1 PE=1 SV=1
trembl
ID B9RY73
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0810770 PE=4 SV=1
Gene Ontology
ID GO:0003854
description 3-oxo-delta( )-steroid 5-beta-reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32495: 114975-116579
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003077_060 0.0 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
2 Hb_002107_110 0.0887337735 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
3 Hb_092458_010 0.1006285632 - - calmodulin binding protein, putative [Ricinus communis]
4 Hb_005867_030 0.1031598581 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
5 Hb_007416_170 0.1110501066 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
6 Hb_001619_020 0.1182425491 - - LRR receptor-like kinase family protein [Medicago truncatula]
7 Hb_000237_070 0.1235184902 - - Purple acid phosphatase precursor, putative [Ricinus communis]
8 Hb_002615_010 0.129747005 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
9 Hb_000177_130 0.1306307322 - - wall-associated kinase, putative [Ricinus communis]
10 Hb_002010_020 0.1326110368 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
11 Hb_000495_050 0.133171819 - - hypothetical protein JCGZ_25174 [Jatropha curcas]
12 Hb_005463_070 0.1357893284 - - calcium ion binding protein, putative [Ricinus communis]
13 Hb_003387_080 0.1358186708 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_004880_100 0.1375819289 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Glycine max]
15 Hb_005016_080 0.1381558439 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
16 Hb_001635_230 0.1384249863 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_000318_050 0.1388125577 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
18 Hb_000359_260 0.1437842274 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
19 Hb_005814_010 0.1484632651 - - ATP binding protein, putative [Ricinus communis]
20 Hb_002890_320 0.1488949266 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]

Gene co-expression network

sample Hb_003077_060 Hb_003077_060 Hb_002107_110 Hb_002107_110 Hb_003077_060--Hb_002107_110 Hb_092458_010 Hb_092458_010 Hb_003077_060--Hb_092458_010 Hb_005867_030 Hb_005867_030 Hb_003077_060--Hb_005867_030 Hb_007416_170 Hb_007416_170 Hb_003077_060--Hb_007416_170 Hb_001619_020 Hb_001619_020 Hb_003077_060--Hb_001619_020 Hb_000237_070 Hb_000237_070 Hb_003077_060--Hb_000237_070 Hb_000359_260 Hb_000359_260 Hb_002107_110--Hb_000359_260 Hb_002107_110--Hb_092458_010 Hb_000495_050 Hb_000495_050 Hb_002107_110--Hb_000495_050 Hb_001635_230 Hb_001635_230 Hb_002107_110--Hb_001635_230 Hb_002615_010 Hb_002615_010 Hb_002107_110--Hb_002615_010 Hb_005433_030 Hb_005433_030 Hb_092458_010--Hb_005433_030 Hb_092458_010--Hb_002615_010 Hb_018633_010 Hb_018633_010 Hb_092458_010--Hb_018633_010 Hb_002010_020 Hb_002010_020 Hb_092458_010--Hb_002010_020 Hb_005867_030--Hb_000237_070 Hb_005463_070 Hb_005463_070 Hb_005867_030--Hb_005463_070 Hb_005867_030--Hb_001619_020 Hb_005867_030--Hb_000495_050 Hb_000318_050 Hb_000318_050 Hb_005867_030--Hb_000318_050 Hb_002890_320 Hb_002890_320 Hb_007416_170--Hb_002890_320 Hb_004880_100 Hb_004880_100 Hb_007416_170--Hb_004880_100 Hb_007416_170--Hb_005867_030 Hb_004837_110 Hb_004837_110 Hb_007416_170--Hb_004837_110 Hb_003029_010 Hb_003029_010 Hb_007416_170--Hb_003029_010 Hb_000031_160 Hb_000031_160 Hb_001619_020--Hb_000031_160 Hb_001619_020--Hb_001635_230 Hb_001619_020--Hb_000237_070 Hb_001619_020--Hb_005463_070 Hb_005628_050 Hb_005628_050 Hb_001619_020--Hb_005628_050 Hb_031862_020 Hb_031862_020 Hb_000237_070--Hb_031862_020 Hb_000382_030 Hb_000382_030 Hb_000237_070--Hb_000382_030 Hb_167272_010 Hb_167272_010 Hb_000237_070--Hb_167272_010 Hb_000237_070--Hb_000318_050 Hb_001377_130 Hb_001377_130 Hb_000237_070--Hb_001377_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0395547 118.888 100.6 24.2359 0 0.0184363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.241258 0.0948891 0.412035 38.0696 30.7132

CAGE analysis