Hb_000031_160

Information

Type transcription factor
Description TF Family: WRKY
Location Contig31: 116208-118074
Sequence    

Annotation

kegg
ID rcu:RCOM_0919270
description WRKY transcription factor, putative
nr
ID XP_012076351.1
description PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
swissprot
ID Q9SV15
description Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=2 SV=2
trembl
ID S5CKB9
description Uncharacterized protein OS=Jatropha curcas GN=WRKY43 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32782: 116250-118096 , PASA_asmbl_32783: 117125-117336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_160 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
2 Hb_001619_020 0.0907850022 - - LRR receptor-like kinase family protein [Medicago truncatula]
3 Hb_005628_050 0.1036569335 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
4 Hb_001141_210 0.10690173 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
5 Hb_005814_010 0.1116906564 - - ATP binding protein, putative [Ricinus communis]
6 Hb_004785_160 0.1118485628 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
7 Hb_001635_230 0.1151385596 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_000110_030 0.116076596 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
9 Hb_002973_070 0.1239225706 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
10 Hb_000417_120 0.1241404377 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
11 Hb_000598_020 0.1248157067 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
12 Hb_000552_090 0.1256970497 - - hypothetical protein JCGZ_18511 [Jatropha curcas]
13 Hb_005867_030 0.1285631254 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
14 Hb_002030_180 0.1338571343 - - ring finger protein, putative [Ricinus communis]
15 Hb_000495_050 0.1343925226 - - hypothetical protein JCGZ_25174 [Jatropha curcas]
16 Hb_003680_250 0.1365097051 - - PREDICTED: probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X2 [Jatropha curcas]
17 Hb_002615_010 0.140701965 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
18 Hb_002471_190 0.141315 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
19 Hb_177215_020 0.1415002902 - - acc synthase, putative [Ricinus communis]
20 Hb_000382_030 0.1433310114 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]

Gene co-expression network

sample Hb_000031_160 Hb_000031_160 Hb_001619_020 Hb_001619_020 Hb_000031_160--Hb_001619_020 Hb_005628_050 Hb_005628_050 Hb_000031_160--Hb_005628_050 Hb_001141_210 Hb_001141_210 Hb_000031_160--Hb_001141_210 Hb_005814_010 Hb_005814_010 Hb_000031_160--Hb_005814_010 Hb_004785_160 Hb_004785_160 Hb_000031_160--Hb_004785_160 Hb_001635_230 Hb_001635_230 Hb_000031_160--Hb_001635_230 Hb_005867_030 Hb_005867_030 Hb_001619_020--Hb_005867_030 Hb_001619_020--Hb_001635_230 Hb_000237_070 Hb_000237_070 Hb_001619_020--Hb_000237_070 Hb_005463_070 Hb_005463_070 Hb_001619_020--Hb_005463_070 Hb_001619_020--Hb_005628_050 Hb_001832_240 Hb_001832_240 Hb_005628_050--Hb_001832_240 Hb_000382_030 Hb_000382_030 Hb_005628_050--Hb_000382_030 Hb_001377_130 Hb_001377_130 Hb_005628_050--Hb_001377_130 Hb_000598_020 Hb_000598_020 Hb_005628_050--Hb_000598_020 Hb_000417_120 Hb_000417_120 Hb_005628_050--Hb_000417_120 Hb_001141_210--Hb_004785_160 Hb_002774_180 Hb_002774_180 Hb_001141_210--Hb_002774_180 Hb_002973_070 Hb_002973_070 Hb_001141_210--Hb_002973_070 Hb_138086_010 Hb_138086_010 Hb_001141_210--Hb_138086_010 Hb_070634_010 Hb_070634_010 Hb_001141_210--Hb_070634_010 Hb_000495_050 Hb_000495_050 Hb_005814_010--Hb_000495_050 Hb_000771_070 Hb_000771_070 Hb_005814_010--Hb_000771_070 Hb_000402_030 Hb_000402_030 Hb_005814_010--Hb_000402_030 Hb_052434_010 Hb_052434_010 Hb_005814_010--Hb_052434_010 Hb_000552_090 Hb_000552_090 Hb_005814_010--Hb_000552_090 Hb_000110_030 Hb_000110_030 Hb_004785_160--Hb_000110_030 Hb_004785_160--Hb_002973_070 Hb_004544_010 Hb_004544_010 Hb_004785_160--Hb_004544_010 Hb_043522_010 Hb_043522_010 Hb_004785_160--Hb_043522_010 Hb_002615_010 Hb_002615_010 Hb_001635_230--Hb_002615_010 Hb_002471_190 Hb_002471_190 Hb_001635_230--Hb_002471_190 Hb_017693_040 Hb_017693_040 Hb_001635_230--Hb_017693_040 Hb_000359_260 Hb_000359_260 Hb_001635_230--Hb_000359_260 Hb_158111_010 Hb_158111_010 Hb_001635_230--Hb_158111_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.851878 180.151 147.451 78.8698 0.330193 0.485077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.790905 2.05309 1.68 73.144 16.6937

CAGE analysis