Hb_052434_010

Information

Type -
Description -
Location Contig52434: 6612-14404
Sequence    

Annotation

kegg
ID rcu:RCOM_0519620
description ATP binding protein, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_011101928.1
description PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Sesamum indicum]
swissprot
ID C0LGG9
description Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=2 SV=2
trembl
ID A0A067JBH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21627 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at1g07650 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46921: 6320-9093 , PASA_asmbl_46922: 9184-14433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052434_010 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Sesamum indicum]
2 Hb_003529_230 0.1132186632 transcription factor TF Family: ERF -
3 Hb_005814_010 0.1152593159 - - ATP binding protein, putative [Ricinus communis]
4 Hb_025236_020 0.1206716376 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
5 Hb_000359_260 0.1352065028 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
6 Hb_000001_010 0.1367194157 - - PREDICTED: uncharacterized protein LOC105648961 [Jatropha curcas]
7 Hb_002107_110 0.1397790948 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
8 Hb_000402_030 0.1457276358 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
9 Hb_000495_050 0.1475807889 - - hypothetical protein JCGZ_25174 [Jatropha curcas]
10 Hb_000451_040 0.1485760837 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000771_070 0.1520097167 - - PREDICTED: plastidial pyruvate kinase 4, chloroplastic [Jatropha curcas]
12 Hb_003077_060 0.1526945241 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
13 Hb_007416_170 0.153473112 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
14 Hb_001619_020 0.1541215554 - - LRR receptor-like kinase family protein [Medicago truncatula]
15 Hb_000031_160 0.1574185415 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
16 Hb_005375_070 0.1605990038 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
17 Hb_002343_020 0.1607539862 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
18 Hb_184008_010 0.1610876856 - - putative LRR receptor-like serine/threonine-protein kinase [Morus notabilis]
19 Hb_000027_130 0.164763426 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
20 Hb_002615_010 0.1655211786 - - Uncharacterized protein TCM_040942 [Theobroma cacao]

Gene co-expression network

sample Hb_052434_010 Hb_052434_010 Hb_003529_230 Hb_003529_230 Hb_052434_010--Hb_003529_230 Hb_005814_010 Hb_005814_010 Hb_052434_010--Hb_005814_010 Hb_025236_020 Hb_025236_020 Hb_052434_010--Hb_025236_020 Hb_000359_260 Hb_000359_260 Hb_052434_010--Hb_000359_260 Hb_000001_010 Hb_000001_010 Hb_052434_010--Hb_000001_010 Hb_002107_110 Hb_002107_110 Hb_052434_010--Hb_002107_110 Hb_003529_230--Hb_025236_020 Hb_000771_070 Hb_000771_070 Hb_003529_230--Hb_000771_070 Hb_000402_030 Hb_000402_030 Hb_003529_230--Hb_000402_030 Hb_000752_020 Hb_000752_020 Hb_003529_230--Hb_000752_020 Hb_003529_230--Hb_005814_010 Hb_000495_050 Hb_000495_050 Hb_005814_010--Hb_000495_050 Hb_005814_010--Hb_000771_070 Hb_000031_160 Hb_000031_160 Hb_005814_010--Hb_000031_160 Hb_005814_010--Hb_000402_030 Hb_000552_090 Hb_000552_090 Hb_005814_010--Hb_000552_090 Hb_002343_020 Hb_002343_020 Hb_025236_020--Hb_002343_020 Hb_000421_020 Hb_000421_020 Hb_025236_020--Hb_000421_020 Hb_025236_020--Hb_005814_010 Hb_025236_020--Hb_000771_070 Hb_000359_260--Hb_002107_110 Hb_001635_230 Hb_001635_230 Hb_000359_260--Hb_001635_230 Hb_017693_040 Hb_017693_040 Hb_000359_260--Hb_017693_040 Hb_154466_010 Hb_154466_010 Hb_000359_260--Hb_154466_010 Hb_077694_010 Hb_077694_010 Hb_000359_260--Hb_077694_010 Hb_002010_020 Hb_002010_020 Hb_000359_260--Hb_002010_020 Hb_005628_050 Hb_005628_050 Hb_000001_010--Hb_005628_050 Hb_006925_060 Hb_006925_060 Hb_000001_010--Hb_006925_060 Hb_042098_010 Hb_042098_010 Hb_000001_010--Hb_042098_010 Hb_000001_010--Hb_002107_110 Hb_000001_010--Hb_000495_050 Hb_003077_060 Hb_003077_060 Hb_002107_110--Hb_003077_060 Hb_092458_010 Hb_092458_010 Hb_002107_110--Hb_092458_010 Hb_002107_110--Hb_000495_050 Hb_002107_110--Hb_001635_230 Hb_002615_010 Hb_002615_010 Hb_002107_110--Hb_002615_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.923324 20.0453 17.5906 4.68251 0.290649 0.739324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0417768 0.016436 0.405917 6.50865 3.06276

CAGE analysis