Hb_006925_060

Information

Type -
Description -
Location Contig6925: 110068-114050
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08910g
description POPTRDRAFT_640534; hypothetical protein
nr
ID KDP25495.1
description hypothetical protein JCGZ_20651 [Jatropha curcas]
swissprot
ID Q8L4D8
description Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
trembl
ID A0A067JZQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20651 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54499: 110073-114010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006925_060 0.0 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
2 Hb_000001_010 0.1299283531 - - PREDICTED: uncharacterized protein LOC105648961 [Jatropha curcas]
3 Hb_063523_010 0.1384623904 - - -
4 Hb_003680_250 0.147678237 - - PREDICTED: probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_005628_050 0.1531133979 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
6 Hb_003751_050 0.1551529636 - - PREDICTED: amino acid permease 4-like [Jatropha curcas]
7 Hb_187991_010 0.1581757753 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
8 Hb_005433_030 0.1595006892 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
9 Hb_000130_080 0.1609182901 - - unnamed protein product [Vitis vinifera]
10 Hb_000046_590 0.1611452805 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
11 Hb_001832_240 0.1660067074 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
12 Hb_000893_050 0.1670776861 - - structural constituent of cell wall, putative [Ricinus communis]
13 Hb_025236_020 0.1713448348 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
14 Hb_003529_230 0.1755548527 transcription factor TF Family: ERF -
15 Hb_008080_030 0.1778865922 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
16 Hb_042098_010 0.1789152275 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
17 Hb_002615_010 0.1792967376 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
18 Hb_003077_060 0.1796308276 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
19 Hb_052434_010 0.1798664575 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Sesamum indicum]
20 Hb_092458_010 0.1800628954 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006925_060 Hb_006925_060 Hb_000001_010 Hb_000001_010 Hb_006925_060--Hb_000001_010 Hb_063523_010 Hb_063523_010 Hb_006925_060--Hb_063523_010 Hb_003680_250 Hb_003680_250 Hb_006925_060--Hb_003680_250 Hb_005628_050 Hb_005628_050 Hb_006925_060--Hb_005628_050 Hb_003751_050 Hb_003751_050 Hb_006925_060--Hb_003751_050 Hb_187991_010 Hb_187991_010 Hb_006925_060--Hb_187991_010 Hb_000001_010--Hb_005628_050 Hb_042098_010 Hb_042098_010 Hb_000001_010--Hb_042098_010 Hb_052434_010 Hb_052434_010 Hb_000001_010--Hb_052434_010 Hb_002107_110 Hb_002107_110 Hb_000001_010--Hb_002107_110 Hb_000495_050 Hb_000495_050 Hb_000001_010--Hb_000495_050 Hb_063523_010--Hb_187991_010 Hb_000359_280 Hb_000359_280 Hb_063523_010--Hb_000359_280 Hb_001102_270 Hb_001102_270 Hb_063523_010--Hb_001102_270 Hb_033045_010 Hb_033045_010 Hb_063523_010--Hb_033045_010 Hb_107809_010 Hb_107809_010 Hb_063523_010--Hb_107809_010 Hb_031862_020 Hb_031862_020 Hb_063523_010--Hb_031862_020 Hb_003680_250--Hb_005628_050 Hb_000382_030 Hb_000382_030 Hb_003680_250--Hb_000382_030 Hb_000237_070 Hb_000237_070 Hb_003680_250--Hb_000237_070 Hb_000417_120 Hb_000417_120 Hb_003680_250--Hb_000417_120 Hb_000031_160 Hb_000031_160 Hb_003680_250--Hb_000031_160 Hb_003529_230 Hb_003529_230 Hb_003680_250--Hb_003529_230 Hb_005628_050--Hb_000031_160 Hb_001832_240 Hb_001832_240 Hb_005628_050--Hb_001832_240 Hb_005628_050--Hb_000382_030 Hb_001377_130 Hb_001377_130 Hb_005628_050--Hb_001377_130 Hb_000598_020 Hb_000598_020 Hb_005628_050--Hb_000598_020 Hb_005628_050--Hb_000417_120 Hb_000893_050 Hb_000893_050 Hb_003751_050--Hb_000893_050 Hb_002374_360 Hb_002374_360 Hb_003751_050--Hb_002374_360 Hb_000862_060 Hb_000862_060 Hb_003751_050--Hb_000862_060 Hb_008080_030 Hb_008080_030 Hb_003751_050--Hb_008080_030 Hb_000046_590 Hb_000046_590 Hb_003751_050--Hb_000046_590 Hb_187991_010--Hb_000359_280 Hb_187991_010--Hb_001102_270 Hb_187991_010--Hb_031862_020 Hb_005542_040 Hb_005542_040 Hb_187991_010--Hb_005542_040 Hb_000008_080 Hb_000008_080 Hb_187991_010--Hb_000008_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.241984 20.0384 20.2974 2.90123 0.583157 0.148999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.025056 0.0394281 0 15.497 3.57256

CAGE analysis