Hb_003680_250

Information

Type -
Description -
Location Contig3680: 258798-263284
Sequence    

Annotation

kegg
ID rcu:RCOM_0840970
description 3-deoxy-d-manno-octulosonic-acid transferase, putative
nr
ID XP_012082548.1
description PREDICTED: probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID Q8VZA5
description Probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial OS=Arabidopsis thaliana GN=KDTA PE=2 SV=1
trembl
ID A0A067K2K5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16632 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37857: 262410-263488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_250 0.0 - - PREDICTED: probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X2 [Jatropha curcas]
2 Hb_005628_050 0.1174716056 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
3 Hb_000382_030 0.1190009579 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
4 Hb_000237_070 0.1309784531 - - Purple acid phosphatase precursor, putative [Ricinus communis]
5 Hb_000417_120 0.1316535022 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
6 Hb_000031_160 0.1365097051 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
7 Hb_003529_230 0.1368999368 transcription factor TF Family: ERF -
8 Hb_001377_130 0.1374100844 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
9 Hb_005867_030 0.1396294266 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
10 Hb_001619_020 0.1416958234 - - LRR receptor-like kinase family protein [Medicago truncatula]
11 Hb_006925_060 0.147678237 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
12 Hb_031862_020 0.1477671983 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
13 Hb_002343_020 0.1501200093 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
14 Hb_000318_050 0.150649258 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
15 Hb_001538_050 0.1523400241 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
16 Hb_000598_020 0.1544214 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
17 Hb_003077_060 0.154845669 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
18 Hb_000001_010 0.1596629804 - - PREDICTED: uncharacterized protein LOC105648961 [Jatropha curcas]
19 Hb_005814_010 0.1599581071 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000402_030 0.160049777 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003680_250 Hb_003680_250 Hb_005628_050 Hb_005628_050 Hb_003680_250--Hb_005628_050 Hb_000382_030 Hb_000382_030 Hb_003680_250--Hb_000382_030 Hb_000237_070 Hb_000237_070 Hb_003680_250--Hb_000237_070 Hb_000417_120 Hb_000417_120 Hb_003680_250--Hb_000417_120 Hb_000031_160 Hb_000031_160 Hb_003680_250--Hb_000031_160 Hb_003529_230 Hb_003529_230 Hb_003680_250--Hb_003529_230 Hb_005628_050--Hb_000031_160 Hb_001832_240 Hb_001832_240 Hb_005628_050--Hb_001832_240 Hb_005628_050--Hb_000382_030 Hb_001377_130 Hb_001377_130 Hb_005628_050--Hb_001377_130 Hb_000598_020 Hb_000598_020 Hb_005628_050--Hb_000598_020 Hb_005628_050--Hb_000417_120 Hb_000382_030--Hb_001377_130 Hb_000382_030--Hb_000237_070 Hb_000318_050 Hb_000318_050 Hb_000382_030--Hb_000318_050 Hb_000085_220 Hb_000085_220 Hb_000382_030--Hb_000085_220 Hb_031862_020 Hb_031862_020 Hb_000382_030--Hb_031862_020 Hb_001123_170 Hb_001123_170 Hb_000382_030--Hb_001123_170 Hb_000237_070--Hb_031862_020 Hb_167272_010 Hb_167272_010 Hb_000237_070--Hb_167272_010 Hb_005867_030 Hb_005867_030 Hb_000237_070--Hb_005867_030 Hb_000237_070--Hb_000318_050 Hb_000237_070--Hb_001377_130 Hb_000771_030 Hb_000771_030 Hb_000417_120--Hb_000771_030 Hb_000417_120--Hb_000598_020 Hb_065230_010 Hb_065230_010 Hb_000417_120--Hb_065230_010 Hb_000417_120--Hb_000382_030 Hb_000417_120--Hb_000237_070 Hb_000075_110 Hb_000075_110 Hb_000417_120--Hb_000075_110 Hb_001619_020 Hb_001619_020 Hb_000031_160--Hb_001619_020 Hb_001141_210 Hb_001141_210 Hb_000031_160--Hb_001141_210 Hb_005814_010 Hb_005814_010 Hb_000031_160--Hb_005814_010 Hb_004785_160 Hb_004785_160 Hb_000031_160--Hb_004785_160 Hb_001635_230 Hb_001635_230 Hb_000031_160--Hb_001635_230 Hb_052434_010 Hb_052434_010 Hb_003529_230--Hb_052434_010 Hb_025236_020 Hb_025236_020 Hb_003529_230--Hb_025236_020 Hb_000771_070 Hb_000771_070 Hb_003529_230--Hb_000771_070 Hb_000402_030 Hb_000402_030 Hb_003529_230--Hb_000402_030 Hb_000752_020 Hb_000752_020 Hb_003529_230--Hb_000752_020 Hb_003529_230--Hb_005814_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0221261 3.71722 2.93583 1.29144 0.207391 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0398566 0 1.93941 0.733832

CAGE analysis