Hb_001377_130

Information

Type -
Description -
Location Contig1377: 124125-127937
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09350g
description POPTRDRAFT_1098575; hypothetical protein
nr
ID XP_012083222.1
description PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
swissprot
ID O65717
description Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1
trembl
ID A0A067JX85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14268 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cyclic nucleotide-gated ion channel 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10390: 125682-125814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_130 0.0 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
2 Hb_000382_030 0.0676811788 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
3 Hb_001123_170 0.0817069653 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000237_070 0.0967698052 - - Purple acid phosphatase precursor, putative [Ricinus communis]
5 Hb_000318_050 0.1074956895 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
6 Hb_005628_050 0.1116714346 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
7 Hb_001538_050 0.1122008111 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
8 Hb_007894_030 0.1132169899 - - calcium-dependent protein kinase, putative [Ricinus communis]
9 Hb_000085_220 0.1142354945 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005649_010 0.1159361185 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
11 Hb_031862_020 0.1163359472 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
12 Hb_012098_180 0.118020197 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
13 Hb_000417_120 0.1194550773 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
14 Hb_003656_170 0.1211182461 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
15 Hb_002343_020 0.1213595927 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
16 Hb_043987_010 0.124446799 - - glutathione s-transferase, putative [Ricinus communis]
17 Hb_002078_250 0.1247644329 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005867_030 0.1252392318 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
19 Hb_000477_110 0.1274577558 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
20 Hb_064985_010 0.1287075897 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]

Gene co-expression network

sample Hb_001377_130 Hb_001377_130 Hb_000382_030 Hb_000382_030 Hb_001377_130--Hb_000382_030 Hb_001123_170 Hb_001123_170 Hb_001377_130--Hb_001123_170 Hb_000237_070 Hb_000237_070 Hb_001377_130--Hb_000237_070 Hb_000318_050 Hb_000318_050 Hb_001377_130--Hb_000318_050 Hb_005628_050 Hb_005628_050 Hb_001377_130--Hb_005628_050 Hb_001538_050 Hb_001538_050 Hb_001377_130--Hb_001538_050 Hb_000382_030--Hb_000237_070 Hb_000382_030--Hb_000318_050 Hb_000085_220 Hb_000085_220 Hb_000382_030--Hb_000085_220 Hb_031862_020 Hb_031862_020 Hb_000382_030--Hb_031862_020 Hb_000382_030--Hb_001123_170 Hb_003656_170 Hb_003656_170 Hb_001123_170--Hb_003656_170 Hb_004544_090 Hb_004544_090 Hb_001123_170--Hb_004544_090 Hb_000477_110 Hb_000477_110 Hb_001123_170--Hb_000477_110 Hb_002078_250 Hb_002078_250 Hb_001123_170--Hb_002078_250 Hb_000237_070--Hb_031862_020 Hb_167272_010 Hb_167272_010 Hb_000237_070--Hb_167272_010 Hb_005867_030 Hb_005867_030 Hb_000237_070--Hb_005867_030 Hb_000237_070--Hb_000318_050 Hb_005463_070 Hb_005463_070 Hb_000318_050--Hb_005463_070 Hb_003387_080 Hb_003387_080 Hb_000318_050--Hb_003387_080 Hb_001160_020 Hb_001160_020 Hb_000318_050--Hb_001160_020 Hb_005016_080 Hb_005016_080 Hb_000318_050--Hb_005016_080 Hb_002010_100 Hb_002010_100 Hb_000318_050--Hb_002010_100 Hb_000031_160 Hb_000031_160 Hb_005628_050--Hb_000031_160 Hb_001832_240 Hb_001832_240 Hb_005628_050--Hb_001832_240 Hb_005628_050--Hb_000382_030 Hb_000598_020 Hb_000598_020 Hb_005628_050--Hb_000598_020 Hb_000417_120 Hb_000417_120 Hb_005628_050--Hb_000417_120 Hb_012098_180 Hb_012098_180 Hb_001538_050--Hb_012098_180 Hb_000522_130 Hb_000522_130 Hb_001538_050--Hb_000522_130 Hb_001538_050--Hb_000237_070 Hb_001538_050--Hb_001123_170 Hb_001538_050--Hb_000382_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.88025 2.06888 1.46853 0.0159241 0.0369207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.036105 0.0426156 0.0270692 1.73766 0.905433

CAGE analysis