Hb_002010_100

Information

Type -
Description -
Location Contig2010: 86023-93616
Sequence    

Annotation

kegg
ID rcu:RCOM_0407820
description Membralin, putative
nr
ID XP_012071324.1
description PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
swissprot
ID Q4ZIN3
description Membralin OS=Homo sapiens GN=TMEM259 PE=1 SV=1
trembl
ID A0A067L433
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05011 PE=4 SV=1
Gene Ontology
ID GO:0005783
description nuf2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20440: 88071-90578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002010_100 0.0 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
2 Hb_007483_080 0.0636104697 - - hypothetical protein RCOM_0634810 [Ricinus communis]
3 Hb_002361_010 0.0736507834 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
4 Hb_005016_080 0.0782531477 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
5 Hb_005463_070 0.0793445781 - - calcium ion binding protein, putative [Ricinus communis]
6 Hb_000318_050 0.0921237069 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
7 Hb_000365_180 0.0988419811 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
8 Hb_001989_070 0.1002727625 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
9 Hb_000007_440 0.1026305567 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
10 Hb_003387_080 0.1115388185 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_001158_120 0.1155518482 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
12 Hb_003029_010 0.1156181956 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
13 Hb_009476_070 0.1162604582 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
14 Hb_000046_430 0.1163498015 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
15 Hb_000152_410 0.1164925152 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
16 Hb_000689_010 0.1180635931 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
17 Hb_001160_020 0.1190691672 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
18 Hb_004611_050 0.1197169134 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
19 Hb_006970_170 0.1213461802 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
20 Hb_003849_030 0.121354711 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]

Gene co-expression network

sample Hb_002010_100 Hb_002010_100 Hb_007483_080 Hb_007483_080 Hb_002010_100--Hb_007483_080 Hb_002361_010 Hb_002361_010 Hb_002010_100--Hb_002361_010 Hb_005016_080 Hb_005016_080 Hb_002010_100--Hb_005016_080 Hb_005463_070 Hb_005463_070 Hb_002010_100--Hb_005463_070 Hb_000318_050 Hb_000318_050 Hb_002010_100--Hb_000318_050 Hb_000365_180 Hb_000365_180 Hb_002010_100--Hb_000365_180 Hb_000007_440 Hb_000007_440 Hb_007483_080--Hb_000007_440 Hb_007483_080--Hb_002361_010 Hb_002849_180 Hb_002849_180 Hb_007483_080--Hb_002849_180 Hb_001158_120 Hb_001158_120 Hb_007483_080--Hb_001158_120 Hb_000500_230 Hb_000500_230 Hb_007483_080--Hb_000500_230 Hb_002361_010--Hb_005016_080 Hb_002361_010--Hb_005463_070 Hb_002361_010--Hb_000318_050 Hb_018212_010 Hb_018212_010 Hb_002361_010--Hb_018212_010 Hb_005016_080--Hb_005463_070 Hb_005016_080--Hb_000318_050 Hb_003387_080 Hb_003387_080 Hb_005016_080--Hb_003387_080 Hb_001160_020 Hb_001160_020 Hb_005016_080--Hb_001160_020 Hb_005463_070--Hb_000318_050 Hb_005867_030 Hb_005867_030 Hb_005463_070--Hb_005867_030 Hb_005463_070--Hb_003387_080 Hb_000318_050--Hb_003387_080 Hb_000382_030 Hb_000382_030 Hb_000318_050--Hb_000382_030 Hb_000318_050--Hb_001160_020 Hb_009476_070 Hb_009476_070 Hb_000365_180--Hb_009476_070 Hb_000163_180 Hb_000163_180 Hb_000365_180--Hb_000163_180 Hb_001989_070 Hb_001989_070 Hb_000365_180--Hb_001989_070 Hb_008749_010 Hb_008749_010 Hb_000365_180--Hb_008749_010 Hb_033187_020 Hb_033187_020 Hb_000365_180--Hb_033187_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.117263 19.0681 24.534 12.7705 0.305902 0.221375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.107082 0.147437 0.159045 9.63515 11.3835

CAGE analysis