Hb_005463_070

Information

Type -
Description -
Location Contig5463: 37713-39827
Sequence    

Annotation

kegg
ID rcu:RCOM_1516680
description calcium ion binding protein, putative
nr
ID XP_002524001.1
description calcium ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDD2
description Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_1516680 PE=4 SV=1
Gene Ontology
ID GO:0009536
description calcium-binding ef hand family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48004: 37588-39096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005463_070 0.0 - - calcium ion binding protein, putative [Ricinus communis]
2 Hb_000318_050 0.0762225539 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
3 Hb_002010_100 0.0793445781 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
4 Hb_005867_030 0.0855125633 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
5 Hb_005016_080 0.0873999398 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
6 Hb_003387_080 0.097370382 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_002361_010 0.1084108182 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
8 Hb_000365_180 0.1105118907 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
9 Hb_007483_080 0.1123845613 - - hypothetical protein RCOM_0634810 [Ricinus communis]
10 Hb_000152_410 0.1129063165 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
11 Hb_009476_070 0.1144158173 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
12 Hb_001619_020 0.1164446866 - - LRR receptor-like kinase family protein [Medicago truncatula]
13 Hb_003029_010 0.1168269426 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
14 Hb_001989_070 0.1184027444 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
15 Hb_000237_070 0.1187007385 - - Purple acid phosphatase precursor, putative [Ricinus communis]
16 Hb_000382_030 0.1260869631 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
17 Hb_000495_050 0.1275126525 - - hypothetical protein JCGZ_25174 [Jatropha curcas]
18 Hb_001160_020 0.1317358553 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
19 Hb_004837_110 0.1324900532 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
20 Hb_002783_140 0.1338171726 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]

Gene co-expression network

sample Hb_005463_070 Hb_005463_070 Hb_000318_050 Hb_000318_050 Hb_005463_070--Hb_000318_050 Hb_002010_100 Hb_002010_100 Hb_005463_070--Hb_002010_100 Hb_005867_030 Hb_005867_030 Hb_005463_070--Hb_005867_030 Hb_005016_080 Hb_005016_080 Hb_005463_070--Hb_005016_080 Hb_003387_080 Hb_003387_080 Hb_005463_070--Hb_003387_080 Hb_002361_010 Hb_002361_010 Hb_005463_070--Hb_002361_010 Hb_000318_050--Hb_003387_080 Hb_000382_030 Hb_000382_030 Hb_000318_050--Hb_000382_030 Hb_001160_020 Hb_001160_020 Hb_000318_050--Hb_001160_020 Hb_000318_050--Hb_005016_080 Hb_000318_050--Hb_002010_100 Hb_007483_080 Hb_007483_080 Hb_002010_100--Hb_007483_080 Hb_002010_100--Hb_002361_010 Hb_002010_100--Hb_005016_080 Hb_000365_180 Hb_000365_180 Hb_002010_100--Hb_000365_180 Hb_000237_070 Hb_000237_070 Hb_005867_030--Hb_000237_070 Hb_001619_020 Hb_001619_020 Hb_005867_030--Hb_001619_020 Hb_003077_060 Hb_003077_060 Hb_005867_030--Hb_003077_060 Hb_000495_050 Hb_000495_050 Hb_005867_030--Hb_000495_050 Hb_005867_030--Hb_000318_050 Hb_005016_080--Hb_002361_010 Hb_005016_080--Hb_003387_080 Hb_005016_080--Hb_001160_020 Hb_002849_120 Hb_002849_120 Hb_003387_080--Hb_002849_120 Hb_003387_080--Hb_001160_020 Hb_006269_010 Hb_006269_010 Hb_003387_080--Hb_006269_010 Hb_002361_010--Hb_007483_080 Hb_002361_010--Hb_000318_050 Hb_018212_010 Hb_018212_010 Hb_002361_010--Hb_018212_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0354478 7.8221 8.10847 4.22996 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0643696 0.114744 3.09163 3.56082

CAGE analysis