Hb_002361_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig2361: 47884-49473
Sequence    

Annotation

kegg
ID rcu:RCOM_0806290
description NAC domain-containing protein, putative
nr
ID XP_002525740.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9FIW5
description Putative NAC domain-containing protein 94 OS=Arabidopsis thaliana GN=ANAC094 PE=3 SV=1
trembl
ID B9SIC1
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_0806290 PE=4 SV=1
Gene Ontology
ID GO:0003677
description no apical meristem family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24747: 47843-48201 , PASA_asmbl_24748: 48384-49175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002361_010 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_002010_100 0.0736507834 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
3 Hb_005016_080 0.0810749672 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
4 Hb_007483_080 0.0931899241 - - hypothetical protein RCOM_0634810 [Ricinus communis]
5 Hb_005463_070 0.1084108182 - - calcium ion binding protein, putative [Ricinus communis]
6 Hb_000318_050 0.1085158158 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
7 Hb_018212_010 0.1110855859 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
8 Hb_003849_030 0.1118549529 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
9 Hb_000046_430 0.1175636803 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
10 Hb_001160_020 0.1198315524 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
11 Hb_000007_440 0.1244571319 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
12 Hb_000689_010 0.125865706 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
13 Hb_003387_080 0.1299579088 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_001956_080 0.1338788343 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
15 Hb_002783_140 0.1347691883 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
16 Hb_006970_170 0.1369639747 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
17 Hb_001158_120 0.1378197455 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
18 Hb_007747_100 0.1378921103 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
19 Hb_001989_070 0.1381487067 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
20 Hb_005542_030 0.1396924008 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002361_010 Hb_002361_010 Hb_002010_100 Hb_002010_100 Hb_002361_010--Hb_002010_100 Hb_005016_080 Hb_005016_080 Hb_002361_010--Hb_005016_080 Hb_007483_080 Hb_007483_080 Hb_002361_010--Hb_007483_080 Hb_005463_070 Hb_005463_070 Hb_002361_010--Hb_005463_070 Hb_000318_050 Hb_000318_050 Hb_002361_010--Hb_000318_050 Hb_018212_010 Hb_018212_010 Hb_002361_010--Hb_018212_010 Hb_002010_100--Hb_007483_080 Hb_002010_100--Hb_005016_080 Hb_002010_100--Hb_005463_070 Hb_002010_100--Hb_000318_050 Hb_000365_180 Hb_000365_180 Hb_002010_100--Hb_000365_180 Hb_005016_080--Hb_005463_070 Hb_005016_080--Hb_000318_050 Hb_003387_080 Hb_003387_080 Hb_005016_080--Hb_003387_080 Hb_001160_020 Hb_001160_020 Hb_005016_080--Hb_001160_020 Hb_000007_440 Hb_000007_440 Hb_007483_080--Hb_000007_440 Hb_002849_180 Hb_002849_180 Hb_007483_080--Hb_002849_180 Hb_001158_120 Hb_001158_120 Hb_007483_080--Hb_001158_120 Hb_000500_230 Hb_000500_230 Hb_007483_080--Hb_000500_230 Hb_005463_070--Hb_000318_050 Hb_005867_030 Hb_005867_030 Hb_005463_070--Hb_005867_030 Hb_005463_070--Hb_003387_080 Hb_000318_050--Hb_003387_080 Hb_000382_030 Hb_000382_030 Hb_000318_050--Hb_000382_030 Hb_000318_050--Hb_001160_020 Hb_018212_010--Hb_007483_080 Hb_018212_010--Hb_002010_100 Hb_018212_010--Hb_005016_080 Hb_001956_080 Hb_001956_080 Hb_018212_010--Hb_001956_080 Hb_001722_070 Hb_001722_070 Hb_018212_010--Hb_001722_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0983145 11.1846 14.3124 6.68095 0.288023 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.314749 0.282937 0.130977 6.61327 7.93801

CAGE analysis