Hb_018212_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig18212: 5564-9895
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20690g
description hypothetical protein
nr
ID XP_006384740.1
description hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID U5GML6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17752: 6321-6745 , PASA_asmbl_17754: 7700-8122 , PASA_asmbl_17755: 8337-8905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018212_010 0.0 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
2 Hb_002361_010 0.1110855859 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
3 Hb_007483_080 0.1264944571 - - hypothetical protein RCOM_0634810 [Ricinus communis]
4 Hb_002010_100 0.1276645636 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
5 Hb_005016_080 0.1288124769 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
6 Hb_001956_080 0.1312039123 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
7 Hb_001722_070 0.1338988715 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
8 Hb_001377_130 0.1404653462 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
9 Hb_003849_030 0.1431938122 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
10 Hb_000318_050 0.1444281559 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
11 Hb_000046_430 0.1455174698 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
12 Hb_001160_020 0.1470962462 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
13 Hb_003387_080 0.1471771941 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_000007_440 0.1484268885 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
15 Hb_000575_090 0.1491769148 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Populus euphratica]
16 Hb_005463_070 0.1502336951 - - calcium ion binding protein, putative [Ricinus communis]
17 Hb_023344_130 0.1524305 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
18 Hb_002783_140 0.1528452123 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
19 Hb_000024_130 0.1545824064 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000009_150 0.1579438 - - carbohydrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_018212_010 Hb_018212_010 Hb_002361_010 Hb_002361_010 Hb_018212_010--Hb_002361_010 Hb_007483_080 Hb_007483_080 Hb_018212_010--Hb_007483_080 Hb_002010_100 Hb_002010_100 Hb_018212_010--Hb_002010_100 Hb_005016_080 Hb_005016_080 Hb_018212_010--Hb_005016_080 Hb_001956_080 Hb_001956_080 Hb_018212_010--Hb_001956_080 Hb_001722_070 Hb_001722_070 Hb_018212_010--Hb_001722_070 Hb_002361_010--Hb_002010_100 Hb_002361_010--Hb_005016_080 Hb_002361_010--Hb_007483_080 Hb_005463_070 Hb_005463_070 Hb_002361_010--Hb_005463_070 Hb_000318_050 Hb_000318_050 Hb_002361_010--Hb_000318_050 Hb_007483_080--Hb_002010_100 Hb_000007_440 Hb_000007_440 Hb_007483_080--Hb_000007_440 Hb_002849_180 Hb_002849_180 Hb_007483_080--Hb_002849_180 Hb_001158_120 Hb_001158_120 Hb_007483_080--Hb_001158_120 Hb_000500_230 Hb_000500_230 Hb_007483_080--Hb_000500_230 Hb_002010_100--Hb_005016_080 Hb_002010_100--Hb_005463_070 Hb_002010_100--Hb_000318_050 Hb_000365_180 Hb_000365_180 Hb_002010_100--Hb_000365_180 Hb_005016_080--Hb_005463_070 Hb_005016_080--Hb_000318_050 Hb_003387_080 Hb_003387_080 Hb_005016_080--Hb_003387_080 Hb_001160_020 Hb_001160_020 Hb_005016_080--Hb_001160_020 Hb_005488_030 Hb_005488_030 Hb_001956_080--Hb_005488_030 Hb_000477_110 Hb_000477_110 Hb_001956_080--Hb_000477_110 Hb_001153_090 Hb_001153_090 Hb_001956_080--Hb_001153_090 Hb_004421_010 Hb_004421_010 Hb_001956_080--Hb_004421_010 Hb_023344_130 Hb_023344_130 Hb_001956_080--Hb_023344_130 Hb_007747_100 Hb_007747_100 Hb_001956_080--Hb_007747_100 Hb_000024_130 Hb_000024_130 Hb_001722_070--Hb_000024_130 Hb_001722_070--Hb_000007_440 Hb_000009_150 Hb_000009_150 Hb_001722_070--Hb_000009_150 Hb_000417_410 Hb_000417_410 Hb_001722_070--Hb_000417_410 Hb_002571_080 Hb_002571_080 Hb_001722_070--Hb_002571_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0043451 0.792216 0.887244 0.415213 0.00406543 0.0156266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00984032 0.0851855 0 0.548832 0.515064

CAGE analysis