Hb_023344_130

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig23344: 125513-134329
Sequence    

Annotation

kegg
ID tcc:TCM_003892
description Multidrug resistance-associated protein 5 isoform 1
nr
ID AIU41638.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q7GB25
description ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2
trembl
ID A0A097P9R4
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCC5 PE=2 SV=1
Gene Ontology
ID GO:0000325
description abc transporter c family member 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24536: 125550-134610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023344_130 0.0 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
2 Hb_001153_090 0.0834056266 - - PREDICTED: protein FAM63A [Jatropha curcas]
3 Hb_006788_100 0.0906994363 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
4 Hb_001160_020 0.0977735297 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
5 Hb_002078_240 0.0985768297 rubber biosynthesis Gene Name: SRPP4 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
6 Hb_001956_080 0.098584874 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
7 Hb_000501_040 0.0990314698 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_001819_010 0.1000746062 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
9 Hb_114310_050 0.1026081805 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
10 Hb_000477_110 0.1053102044 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
11 Hb_004306_140 0.1077085113 - - calcineurin-like phosphoesterase [Manihot esculenta]
12 Hb_007747_100 0.1098860536 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
13 Hb_007420_020 0.1106406371 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
14 Hb_005488_030 0.1109754415 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
15 Hb_000037_010 0.1122488897 - - PREDICTED: cation/H(+) antiporter 18-like [Jatropha curcas]
16 Hb_000085_220 0.1127402482 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006269_010 0.1131848222 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
18 Hb_000318_050 0.1197063619 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
19 Hb_005496_170 0.1201583382 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
20 Hb_007894_030 0.1224032829 - - calcium-dependent protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_023344_130 Hb_023344_130 Hb_001153_090 Hb_001153_090 Hb_023344_130--Hb_001153_090 Hb_006788_100 Hb_006788_100 Hb_023344_130--Hb_006788_100 Hb_001160_020 Hb_001160_020 Hb_023344_130--Hb_001160_020 Hb_002078_240 Hb_002078_240 Hb_023344_130--Hb_002078_240 Hb_001956_080 Hb_001956_080 Hb_023344_130--Hb_001956_080 Hb_000501_040 Hb_000501_040 Hb_023344_130--Hb_000501_040 Hb_006269_010 Hb_006269_010 Hb_001153_090--Hb_006269_010 Hb_002849_120 Hb_002849_120 Hb_001153_090--Hb_002849_120 Hb_007747_100 Hb_007747_100 Hb_001153_090--Hb_007747_100 Hb_001153_090--Hb_001160_020 Hb_003077_140 Hb_003077_140 Hb_001153_090--Hb_003077_140 Hb_001819_010 Hb_001819_010 Hb_006788_100--Hb_001819_010 Hb_032717_010 Hb_032717_010 Hb_006788_100--Hb_032717_010 Hb_005276_220 Hb_005276_220 Hb_006788_100--Hb_005276_220 Hb_000840_050 Hb_000840_050 Hb_006788_100--Hb_000840_050 Hb_010417_100 Hb_010417_100 Hb_006788_100--Hb_010417_100 Hb_001160_020--Hb_007747_100 Hb_003849_030 Hb_003849_030 Hb_001160_020--Hb_003849_030 Hb_001160_020--Hb_002849_120 Hb_000318_050 Hb_000318_050 Hb_001160_020--Hb_000318_050 Hb_000417_280 Hb_000417_280 Hb_002078_240--Hb_000417_280 Hb_000037_010 Hb_000037_010 Hb_002078_240--Hb_000037_010 Hb_003964_010 Hb_003964_010 Hb_002078_240--Hb_003964_010 Hb_000477_110 Hb_000477_110 Hb_002078_240--Hb_000477_110 Hb_001268_300 Hb_001268_300 Hb_002078_240--Hb_001268_300 Hb_005488_030 Hb_005488_030 Hb_001956_080--Hb_005488_030 Hb_001956_080--Hb_000477_110 Hb_001956_080--Hb_001153_090 Hb_004421_010 Hb_004421_010 Hb_001956_080--Hb_004421_010 Hb_001956_080--Hb_007747_100 Hb_007420_010 Hb_007420_010 Hb_000501_040--Hb_007420_010 Hb_031862_020 Hb_031862_020 Hb_000501_040--Hb_031862_020 Hb_167272_010 Hb_167272_010 Hb_000501_040--Hb_167272_010 Hb_029576_100 Hb_029576_100 Hb_000501_040--Hb_029576_100 Hb_127661_010 Hb_127661_010 Hb_000501_040--Hb_127661_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0864171 11.0386 7.75728 6.05179 0.0845402 0.0492071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0712602 0.0498507 0.144072 9.3264 8.05342

CAGE analysis