Hb_001819_010

Information

Type -
Description -
Location Contig1819: 58001-63998
Sequence    

Annotation

kegg
ID rcu:RCOM_0851590
description Potassium transporter, putative
nr
ID XP_012081921.1
description PREDICTED: potassium transporter 8 [Jatropha curcas]
swissprot
ID Q9M7J9
description Potassium transporter 8 OS=Arabidopsis thaliana GN=POT8 PE=2 SV=2
trembl
ID A0A067LKY5
description Potassium transporter OS=Jatropha curcas GN=JCGZ_09629 PE=3 SV=1
Gene Ontology
ID GO:0016021
description potassium transporter 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17706: 58170-63909
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001819_010 0.0 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
2 Hb_123560_050 0.0614210156 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
3 Hb_006788_100 0.0905876044 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
4 Hb_170878_050 0.0960539784 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
5 Hb_029866_110 0.0965274483 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
6 Hb_000191_100 0.0971803564 - - cytochrome P450, putative [Ricinus communis]
7 Hb_009659_040 0.0991019184 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
8 Hb_001085_230 0.0996213154 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
9 Hb_023344_130 0.1000746062 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
10 Hb_007420_020 0.1065109002 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_010880_010 0.108416006 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
12 Hb_003077_140 0.1092484861 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
13 Hb_016637_020 0.1127045879 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
14 Hb_000614_190 0.1136205393 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
15 Hb_114310_050 0.1165185154 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
16 Hb_000377_160 0.1167518894 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
17 Hb_032717_010 0.1186528455 - - unnamed protein product [Vitis vinifera]
18 Hb_005496_170 0.11939949 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
19 Hb_007919_030 0.1216149429 - - -
20 Hb_001660_050 0.1216485733 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Eucalyptus grandis]

Gene co-expression network

sample Hb_001819_010 Hb_001819_010 Hb_123560_050 Hb_123560_050 Hb_001819_010--Hb_123560_050 Hb_006788_100 Hb_006788_100 Hb_001819_010--Hb_006788_100 Hb_170878_050 Hb_170878_050 Hb_001819_010--Hb_170878_050 Hb_029866_110 Hb_029866_110 Hb_001819_010--Hb_029866_110 Hb_000191_100 Hb_000191_100 Hb_001819_010--Hb_000191_100 Hb_009659_040 Hb_009659_040 Hb_001819_010--Hb_009659_040 Hb_000377_160 Hb_000377_160 Hb_123560_050--Hb_000377_160 Hb_003077_140 Hb_003077_140 Hb_123560_050--Hb_003077_140 Hb_123560_050--Hb_029866_110 Hb_007420_020 Hb_007420_020 Hb_123560_050--Hb_007420_020 Hb_026144_030 Hb_026144_030 Hb_123560_050--Hb_026144_030 Hb_023344_130 Hb_023344_130 Hb_006788_100--Hb_023344_130 Hb_032717_010 Hb_032717_010 Hb_006788_100--Hb_032717_010 Hb_005276_220 Hb_005276_220 Hb_006788_100--Hb_005276_220 Hb_000840_050 Hb_000840_050 Hb_006788_100--Hb_000840_050 Hb_010417_100 Hb_010417_100 Hb_006788_100--Hb_010417_100 Hb_001660_050 Hb_001660_050 Hb_170878_050--Hb_001660_050 Hb_170878_050--Hb_029866_110 Hb_016637_020 Hb_016637_020 Hb_170878_050--Hb_016637_020 Hb_170878_050--Hb_009659_040 Hb_001634_080 Hb_001634_080 Hb_170878_050--Hb_001634_080 Hb_029866_110--Hb_001660_050 Hb_029866_110--Hb_016637_020 Hb_029866_110--Hb_009659_040 Hb_000191_100--Hb_016637_020 Hb_031862_200 Hb_031862_200 Hb_000191_100--Hb_031862_200 Hb_000191_100--Hb_029866_110 Hb_007205_020 Hb_007205_020 Hb_000191_100--Hb_007205_020 Hb_000191_100--Hb_123560_050 Hb_000917_120 Hb_000917_120 Hb_009659_040--Hb_000917_120 Hb_009659_040--Hb_001660_050 Hb_138606_020 Hb_138606_020 Hb_009659_040--Hb_138606_020 Hb_009659_040--Hb_000840_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.144319 32.0972 17.5089 16.2418 0.146316 0.493133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0477585 0.263071 0 35.5446 31.2727

CAGE analysis