Hb_031862_200

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig31862: 208540-211780
Sequence    

Annotation

kegg
ID vvi:100265152
description putative disease resistance protein At3g14460
nr
ID XP_002267933.3
description PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A5C669
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014536 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33638: 210505-210929 , PASA_asmbl_33639: 211659-211881 , PASA_asmbl_33640: 212674-213512
cDNA
(Sanger)
(ID:Location)		 001_K07.ab1: 212736-213250 , 002_F01.ab1: 212736-213255 , 003_K15.ab1: 212695-213250 , 003_L09.ab1: 212772-213250 , 003_M09.ab1: 212695-213250 , 004_P18.ab1: 212736-213250 , 005_B11.ab1: 212674-213250 , 005_B23.ab1: 212738-213250 , 005_K24.ab1: 212768-213250 , 006_A14.ab1: 212736-213250 , 006_J13.ab1: 212768-213250 , 007_N15.ab1: 212736-213250 , 009_D06.ab1: 212749-213250 , 010_I10.ab1: 212736-213250 , 011_B10.ab1: 212738-213249 , 011_G02.ab1: 212736-213250 , 011_O09.ab1: 212723-213251 , 012_F02.ab1: 212723-213251 , 014_B19.ab1: 212738-213250 , 014_N07.ab1: 212738-213250 , 016_P11.ab1: 212736-213250 , 017_I21.ab1: 212779-213248 , 019_D15.ab1: 212736-213250 , 019_F12.ab1: 212736-213250 , 021_F03.ab1: 212736-213246 , 023_A13.ab1: 212747-213250 , 024_J20.ab1: 212736-213250 , 025_N24.ab1: 212736-213250 , 026_C02.ab1: 212749-213250 , 028_B14.ab1: 212740-213250 , 028_F13.ab1: 212736-213250 , 028_I11.ab1: 212736-213251 , 031_B22.ab1: 212736-213250 , 031_H08.ab1: 212738-213250 , 034_G17.ab1: 212753-213250 , 034_L08.ab1: 212747-213263 , 034_N22.ab1: 212747-213250 , 034_O13.ab1: 212747-213250 , 038_I22.ab1: 212736-213255 , 039_P02.ab1: 212749-213250 , 043_D14.ab1: 212745-213246 , 045_H16.ab1: 212723-213251 , 048_B23.ab1: 212747-213250 , 048_O05.ab1: 212736-213250

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031862_200 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
2 Hb_004785_200 0.0890118776 - - PREDICTED: protein MKS1 [Jatropha curcas]
3 Hb_000191_100 0.0932375915 - - cytochrome P450, putative [Ricinus communis]
4 Hb_016637_020 0.0961984291 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
5 Hb_001866_100 0.1005419384 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
6 Hb_007035_010 0.1026063505 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
7 Hb_003680_010 0.1028597174 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_000009_390 0.1091412382 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
9 Hb_007205_020 0.1148605005 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
10 Hb_010880_010 0.1232558559 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
11 Hb_003077_140 0.1235687821 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
12 Hb_123560_050 0.1248359655 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
13 Hb_029866_110 0.1277949013 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
14 Hb_001819_010 0.1281112031 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
15 Hb_005496_170 0.1296463708 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
16 Hb_001836_010 0.1323537383 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
17 Hb_002845_020 0.1336668992 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
18 Hb_001109_130 0.1353937956 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
19 Hb_001514_150 0.1369666132 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
20 Hb_003683_200 0.1392296219 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_031862_200 Hb_031862_200 Hb_004785_200 Hb_004785_200 Hb_031862_200--Hb_004785_200 Hb_000191_100 Hb_000191_100 Hb_031862_200--Hb_000191_100 Hb_016637_020 Hb_016637_020 Hb_031862_200--Hb_016637_020 Hb_001866_100 Hb_001866_100 Hb_031862_200--Hb_001866_100 Hb_007035_010 Hb_007035_010 Hb_031862_200--Hb_007035_010 Hb_003680_010 Hb_003680_010 Hb_031862_200--Hb_003680_010 Hb_004785_200--Hb_003680_010 Hb_004785_200--Hb_007035_010 Hb_010880_010 Hb_010880_010 Hb_004785_200--Hb_010880_010 Hb_003077_140 Hb_003077_140 Hb_004785_200--Hb_003077_140 Hb_026144_030 Hb_026144_030 Hb_004785_200--Hb_026144_030 Hb_000191_100--Hb_016637_020 Hb_001819_010 Hb_001819_010 Hb_000191_100--Hb_001819_010 Hb_029866_110 Hb_029866_110 Hb_000191_100--Hb_029866_110 Hb_007205_020 Hb_007205_020 Hb_000191_100--Hb_007205_020 Hb_123560_050 Hb_123560_050 Hb_000191_100--Hb_123560_050 Hb_127661_010 Hb_127661_010 Hb_016637_020--Hb_127661_010 Hb_003494_180 Hb_003494_180 Hb_016637_020--Hb_003494_180 Hb_016637_020--Hb_007205_020 Hb_170878_050 Hb_170878_050 Hb_016637_020--Hb_170878_050 Hb_016637_020--Hb_029866_110 Hb_001866_100--Hb_007035_010 Hb_000009_390 Hb_000009_390 Hb_001866_100--Hb_000009_390 Hb_002845_020 Hb_002845_020 Hb_001866_100--Hb_002845_020 Hb_006588_020 Hb_006588_020 Hb_001866_100--Hb_006588_020 Hb_001866_100--Hb_007205_020 Hb_006827_030 Hb_006827_030 Hb_007035_010--Hb_006827_030 Hb_007035_010--Hb_003680_010 Hb_007035_010--Hb_006588_020 Hb_001836_010 Hb_001836_010 Hb_007035_010--Hb_001836_010 Hb_007035_010--Hb_000009_390 Hb_002615_080 Hb_002615_080 Hb_003680_010--Hb_002615_080 Hb_003680_010--Hb_006827_030 Hb_001883_010 Hb_001883_010 Hb_003680_010--Hb_001883_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0136786 0.742964 0.536118 0.413062 0 0.0332898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.847909 1.3977

CAGE analysis