Hb_001866_100

Information

Type -
Description -
Location Contig1866: 107420-112529
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_009760314.1
description PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001866_100 0.0 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
2 Hb_007035_010 0.0655896238 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
3 Hb_000009_390 0.0709401388 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
4 Hb_002845_020 0.0782390155 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
5 Hb_006588_020 0.0840411072 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
6 Hb_007205_020 0.0972192115 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
7 Hb_031862_200 0.1005419384 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
8 Hb_000049_170 0.1028625778 - - conserved hypothetical protein [Ricinus communis]
9 Hb_016637_020 0.1069309595 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
10 Hb_006827_030 0.1069972784 - - oligopeptide transporter, putative [Ricinus communis]
11 Hb_003494_180 0.1098594013 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
12 Hb_001836_010 0.113166331 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
13 Hb_001301_010 0.1150797028 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_002818_070 0.1192292684 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_003683_200 0.1205762122 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
16 Hb_001514_150 0.1207556823 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
17 Hb_003680_010 0.1217556533 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_004785_200 0.1220605352 - - PREDICTED: protein MKS1 [Jatropha curcas]
19 Hb_001856_110 0.1234156465 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]
20 Hb_031201_010 0.1335991984 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001866_100 Hb_001866_100 Hb_007035_010 Hb_007035_010 Hb_001866_100--Hb_007035_010 Hb_000009_390 Hb_000009_390 Hb_001866_100--Hb_000009_390 Hb_002845_020 Hb_002845_020 Hb_001866_100--Hb_002845_020 Hb_006588_020 Hb_006588_020 Hb_001866_100--Hb_006588_020 Hb_007205_020 Hb_007205_020 Hb_001866_100--Hb_007205_020 Hb_031862_200 Hb_031862_200 Hb_001866_100--Hb_031862_200 Hb_006827_030 Hb_006827_030 Hb_007035_010--Hb_006827_030 Hb_003680_010 Hb_003680_010 Hb_007035_010--Hb_003680_010 Hb_007035_010--Hb_006588_020 Hb_001836_010 Hb_001836_010 Hb_007035_010--Hb_001836_010 Hb_007035_010--Hb_000009_390 Hb_002818_070 Hb_002818_070 Hb_000009_390--Hb_002818_070 Hb_001856_110 Hb_001856_110 Hb_000009_390--Hb_001856_110 Hb_000009_390--Hb_001836_010 Hb_001514_150 Hb_001514_150 Hb_000009_390--Hb_001514_150 Hb_003494_180 Hb_003494_180 Hb_002845_020--Hb_003494_180 Hb_002845_020--Hb_007205_020 Hb_000049_170 Hb_000049_170 Hb_002845_020--Hb_000049_170 Hb_001301_010 Hb_001301_010 Hb_002845_020--Hb_001301_010 Hb_016637_020 Hb_016637_020 Hb_002845_020--Hb_016637_020 Hb_005092_090 Hb_005092_090 Hb_006588_020--Hb_005092_090 Hb_001345_040 Hb_001345_040 Hb_006588_020--Hb_001345_040 Hb_006588_020--Hb_000049_170 Hb_006588_020--Hb_000009_390 Hb_031201_010 Hb_031201_010 Hb_007205_020--Hb_031201_010 Hb_007205_020--Hb_016637_020 Hb_007205_020--Hb_003494_180 Hb_005496_170 Hb_005496_170 Hb_007205_020--Hb_005496_170 Hb_004785_200 Hb_004785_200 Hb_031862_200--Hb_004785_200 Hb_000191_100 Hb_000191_100 Hb_031862_200--Hb_000191_100 Hb_031862_200--Hb_016637_020 Hb_031862_200--Hb_007035_010 Hb_031862_200--Hb_003680_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.426403 0.342857 0.179756 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.437755 0.975114

CAGE analysis