Hb_031201_010

Information

Type -
Description -
Location Contig31201: 667-2838
Sequence    

Annotation

kegg
ID pmum:103344170
description probable receptor-like protein kinase At1g67000
nr
ID XP_012066188.1
description PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
swissprot
ID D7SFH9
description Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 OS=Arabidopsis thaliana GN=GDPDL2 PE=1 SV=1
trembl
ID A0A067LE94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23767 PE=3 SV=1
Gene Ontology
ID GO:0000166
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031201_010 0.0 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
2 Hb_007205_020 0.0694890973 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
3 Hb_119327_010 0.1125813323 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
4 Hb_003680_010 0.1210275182 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_007035_010 0.1245737913 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
6 Hb_000776_020 0.1269527528 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
7 Hb_006827_030 0.1278806615 - - oligopeptide transporter, putative [Ricinus communis]
8 Hb_002845_020 0.1289214177 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
9 Hb_000640_330 0.1299455998 - - conserved hypothetical protein [Ricinus communis]
10 Hb_017098_050 0.131057485 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
11 Hb_001501_020 0.1319853711 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
12 Hb_001866_100 0.1335991984 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
13 Hb_000147_020 0.1339198922 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
14 Hb_005496_170 0.1359882137 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
15 Hb_001301_010 0.1365745958 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_001883_010 0.1394447242 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
17 Hb_000500_360 0.1406344521 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
18 Hb_004864_010 0.1440007062 - - hypothetical protein CICLE_v10003960mg, partial [Citrus clementina]
19 Hb_001109_130 0.1461185626 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
20 Hb_016637_020 0.1477415301 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]

Gene co-expression network

sample Hb_031201_010 Hb_031201_010 Hb_007205_020 Hb_007205_020 Hb_031201_010--Hb_007205_020 Hb_119327_010 Hb_119327_010 Hb_031201_010--Hb_119327_010 Hb_003680_010 Hb_003680_010 Hb_031201_010--Hb_003680_010 Hb_007035_010 Hb_007035_010 Hb_031201_010--Hb_007035_010 Hb_000776_020 Hb_000776_020 Hb_031201_010--Hb_000776_020 Hb_006827_030 Hb_006827_030 Hb_031201_010--Hb_006827_030 Hb_002845_020 Hb_002845_020 Hb_007205_020--Hb_002845_020 Hb_016637_020 Hb_016637_020 Hb_007205_020--Hb_016637_020 Hb_003494_180 Hb_003494_180 Hb_007205_020--Hb_003494_180 Hb_001866_100 Hb_001866_100 Hb_007205_020--Hb_001866_100 Hb_005496_170 Hb_005496_170 Hb_007205_020--Hb_005496_170 Hb_004767_020 Hb_004767_020 Hb_119327_010--Hb_004767_020 Hb_008494_090 Hb_008494_090 Hb_119327_010--Hb_008494_090 Hb_000203_210 Hb_000203_210 Hb_119327_010--Hb_000203_210 Hb_004864_010 Hb_004864_010 Hb_119327_010--Hb_004864_010 Hb_119327_010--Hb_007205_020 Hb_003680_010--Hb_007035_010 Hb_002615_080 Hb_002615_080 Hb_003680_010--Hb_002615_080 Hb_004785_200 Hb_004785_200 Hb_003680_010--Hb_004785_200 Hb_031862_200 Hb_031862_200 Hb_003680_010--Hb_031862_200 Hb_003680_010--Hb_006827_030 Hb_001883_010 Hb_001883_010 Hb_003680_010--Hb_001883_010 Hb_007035_010--Hb_001866_100 Hb_007035_010--Hb_006827_030 Hb_006588_020 Hb_006588_020 Hb_007035_010--Hb_006588_020 Hb_001836_010 Hb_001836_010 Hb_007035_010--Hb_001836_010 Hb_000009_390 Hb_000009_390 Hb_007035_010--Hb_000009_390 Hb_001301_010 Hb_001301_010 Hb_000776_020--Hb_001301_010 Hb_007850_110 Hb_007850_110 Hb_000776_020--Hb_007850_110 Hb_000416_010 Hb_000416_010 Hb_000776_020--Hb_000416_010 Hb_017098_050 Hb_017098_050 Hb_000776_020--Hb_017098_050 Hb_000442_170 Hb_000442_170 Hb_000776_020--Hb_000442_170 Hb_001109_130 Hb_001109_130 Hb_000776_020--Hb_001109_130 Hb_001579_060 Hb_001579_060 Hb_006827_030--Hb_001579_060 Hb_171168_010 Hb_171168_010 Hb_006827_030--Hb_171168_010 Hb_000049_170 Hb_000049_170 Hb_006827_030--Hb_000049_170 Hb_007113_020 Hb_007113_020 Hb_006827_030--Hb_007113_020 Hb_006827_030--Hb_001883_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.16814 1.62769 0.8642 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.116819 0.0612627 0 1.7536 3.0486

CAGE analysis