Hb_000203_210

Information

Type -
Description -
Location Contig203: 256677-266393
Sequence    

Annotation

kegg
ID cic:CICLE_v10015232mg
description hypothetical protein
nr
ID XP_010915524.1
description PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
swissprot
ID -
description -
trembl
ID A0A067JBA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21562 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20803: 257061-257257 , PASA_asmbl_20804: 263421-266347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000203_210 0.0 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
2 Hb_067664_010 0.1354437696 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
3 Hb_008494_090 0.1429626625 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
4 Hb_119327_010 0.1484528926 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
5 Hb_000522_010 0.1530489676 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
6 Hb_000032_600 0.1577565598 - - PREDICTED: B2 protein [Jatropha curcas]
7 Hb_000386_050 0.1601099402 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Jatropha curcas]
8 Hb_000365_220 0.1648757569 - - protein phosphatase-1, putative [Ricinus communis]
9 Hb_000808_260 0.1652486645 - - hypothetical protein RCOM_1434920 [Ricinus communis]
10 Hb_001556_020 0.1691193233 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
11 Hb_000092_120 0.1702436968 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Populus euphratica]
12 Hb_003517_100 0.1705939584 transcription factor TF Family: GRAS -
13 Hb_001054_060 0.1713718679 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
14 Hb_001969_130 0.1716427844 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
15 Hb_001124_140 0.1723865674 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
16 Hb_002835_280 0.1736090693 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
17 Hb_001865_010 0.1738377271 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
18 Hb_001404_090 0.1746746467 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
19 Hb_000417_410 0.176830188 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
20 Hb_005695_080 0.1773905696 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000203_210 Hb_000203_210 Hb_067664_010 Hb_067664_010 Hb_000203_210--Hb_067664_010 Hb_008494_090 Hb_008494_090 Hb_000203_210--Hb_008494_090 Hb_119327_010 Hb_119327_010 Hb_000203_210--Hb_119327_010 Hb_000522_010 Hb_000522_010 Hb_000203_210--Hb_000522_010 Hb_000032_600 Hb_000032_600 Hb_000203_210--Hb_000032_600 Hb_000386_050 Hb_000386_050 Hb_000203_210--Hb_000386_050 Hb_067664_010--Hb_000032_600 Hb_001054_060 Hb_001054_060 Hb_067664_010--Hb_001054_060 Hb_000977_150 Hb_000977_150 Hb_067664_010--Hb_000977_150 Hb_001754_120 Hb_001754_120 Hb_067664_010--Hb_001754_120 Hb_000997_290 Hb_000997_290 Hb_067664_010--Hb_000997_290 Hb_001124_140 Hb_001124_140 Hb_067664_010--Hb_001124_140 Hb_000365_220 Hb_000365_220 Hb_008494_090--Hb_000365_220 Hb_008494_090--Hb_000522_010 Hb_025045_010 Hb_025045_010 Hb_008494_090--Hb_025045_010 Hb_003680_010 Hb_003680_010 Hb_008494_090--Hb_003680_010 Hb_008494_090--Hb_067664_010 Hb_002888_040 Hb_002888_040 Hb_008494_090--Hb_002888_040 Hb_031201_010 Hb_031201_010 Hb_119327_010--Hb_031201_010 Hb_004767_020 Hb_004767_020 Hb_119327_010--Hb_004767_020 Hb_119327_010--Hb_008494_090 Hb_004864_010 Hb_004864_010 Hb_119327_010--Hb_004864_010 Hb_007205_020 Hb_007205_020 Hb_119327_010--Hb_007205_020 Hb_000522_010--Hb_000365_220 Hb_003517_100 Hb_003517_100 Hb_000522_010--Hb_003517_100 Hb_000417_410 Hb_000417_410 Hb_000522_010--Hb_000417_410 Hb_000522_010--Hb_002888_040 Hb_004605_020 Hb_004605_020 Hb_000522_010--Hb_004605_020 Hb_000032_600--Hb_001054_060 Hb_000032_600--Hb_000977_150 Hb_178968_080 Hb_178968_080 Hb_000032_600--Hb_178968_080 Hb_000130_200 Hb_000130_200 Hb_000032_600--Hb_000130_200 Hb_000032_600--Hb_001754_120 Hb_004007_200 Hb_004007_200 Hb_000386_050--Hb_004007_200 Hb_000800_010 Hb_000800_010 Hb_000386_050--Hb_000800_010 Hb_187959_010 Hb_187959_010 Hb_000386_050--Hb_187959_010 Hb_006414_010 Hb_006414_010 Hb_000386_050--Hb_006414_010 Hb_000386_050--Hb_001054_060 Hb_012132_020 Hb_012132_020 Hb_000386_050--Hb_012132_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.115342 1.65024 1.18335 1.14804 0.0332843 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.446275 0.446787 0.0593675 1.32955 2.64186

CAGE analysis