Hb_119327_010

Information

Type -
Description -
Location Contig119327: 538-1284
Sequence    

Annotation

kegg
ID pop:POPTR_0075s00200g
description hypothetical protein
nr
ID XP_006388915.1
description hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
swissprot
ID Q9S9M5
description Wall-associated receptor kinase-like 1 OS=Arabidopsis thaliana GN=WAKL1 PE=2 SV=1
trembl
ID U7E044
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0075s00200g PE=4 SV=1
Gene Ontology
ID GO:0016021
description wall-associated kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05733: 694-1171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119327_010 0.0 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
2 Hb_031201_010 0.1125813323 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
3 Hb_004767_020 0.1227590962 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
4 Hb_008494_090 0.1421729192 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
5 Hb_000203_210 0.1484528926 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
6 Hb_004864_010 0.153168209 - - hypothetical protein CICLE_v10003960mg, partial [Citrus clementina]
7 Hb_007205_020 0.1533604017 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
8 Hb_004525_020 0.1552023273 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]
9 Hb_000365_220 0.1597960471 - - protein phosphatase-1, putative [Ricinus communis]
10 Hb_003680_010 0.1607386339 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_003517_100 0.1623336115 transcription factor TF Family: GRAS -
12 Hb_000522_010 0.1630285059 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
13 Hb_001883_010 0.1666742483 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
14 Hb_001501_020 0.1671453871 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
15 Hb_003683_200 0.1677329031 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
16 Hb_006827_030 0.1700702806 - - oligopeptide transporter, putative [Ricinus communis]
17 Hb_001556_020 0.1703752614 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
18 Hb_000808_260 0.1736624759 - - hypothetical protein RCOM_1434920 [Ricinus communis]
19 Hb_064293_010 0.1739999305 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_002010_050 0.1763629605 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_119327_010 Hb_119327_010 Hb_031201_010 Hb_031201_010 Hb_119327_010--Hb_031201_010 Hb_004767_020 Hb_004767_020 Hb_119327_010--Hb_004767_020 Hb_008494_090 Hb_008494_090 Hb_119327_010--Hb_008494_090 Hb_000203_210 Hb_000203_210 Hb_119327_010--Hb_000203_210 Hb_004864_010 Hb_004864_010 Hb_119327_010--Hb_004864_010 Hb_007205_020 Hb_007205_020 Hb_119327_010--Hb_007205_020 Hb_031201_010--Hb_007205_020 Hb_003680_010 Hb_003680_010 Hb_031201_010--Hb_003680_010 Hb_007035_010 Hb_007035_010 Hb_031201_010--Hb_007035_010 Hb_000776_020 Hb_000776_020 Hb_031201_010--Hb_000776_020 Hb_006827_030 Hb_006827_030 Hb_031201_010--Hb_006827_030 Hb_064293_010 Hb_064293_010 Hb_004767_020--Hb_064293_010 Hb_002849_120 Hb_002849_120 Hb_004767_020--Hb_002849_120 Hb_171168_010 Hb_171168_010 Hb_004767_020--Hb_171168_010 Hb_007113_020 Hb_007113_020 Hb_004767_020--Hb_007113_020 Hb_000680_020 Hb_000680_020 Hb_004767_020--Hb_000680_020 Hb_000365_220 Hb_000365_220 Hb_008494_090--Hb_000365_220 Hb_000522_010 Hb_000522_010 Hb_008494_090--Hb_000522_010 Hb_025045_010 Hb_025045_010 Hb_008494_090--Hb_025045_010 Hb_008494_090--Hb_003680_010 Hb_067664_010 Hb_067664_010 Hb_008494_090--Hb_067664_010 Hb_002888_040 Hb_002888_040 Hb_008494_090--Hb_002888_040 Hb_000203_210--Hb_067664_010 Hb_000203_210--Hb_008494_090 Hb_000203_210--Hb_000522_010 Hb_000032_600 Hb_000032_600 Hb_000203_210--Hb_000032_600 Hb_000386_050 Hb_000386_050 Hb_000203_210--Hb_000386_050 Hb_021443_050 Hb_021443_050 Hb_004864_010--Hb_021443_050 Hb_004864_010--Hb_007035_010 Hb_004864_010--Hb_031201_010 Hb_001866_100 Hb_001866_100 Hb_004864_010--Hb_001866_100 Hb_000856_130 Hb_000856_130 Hb_004864_010--Hb_000856_130 Hb_004864_010--Hb_007205_020 Hb_002845_020 Hb_002845_020 Hb_007205_020--Hb_002845_020 Hb_016637_020 Hb_016637_020 Hb_007205_020--Hb_016637_020 Hb_003494_180 Hb_003494_180 Hb_007205_020--Hb_003494_180 Hb_007205_020--Hb_001866_100 Hb_005496_170 Hb_005496_170 Hb_007205_020--Hb_005496_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.645719 0.633194 0.344111 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0980576 0.0770678 0 0.505098 1.04728

CAGE analysis