Hb_000856_130

Information

Type transcription factor
Description TF Family: LOB
Location Contig856: 103769-104875
Sequence    

Annotation

kegg
ID rcu:RCOM_1513210
description LOB domain-containing protein, putative
nr
ID XP_002511502.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9STS6
description LOB domain-containing protein 27 OS=Arabidopsis thaliana GN=LBD27 PE=2 SV=1
trembl
ID B9R927
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1513210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_130 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_004864_010 0.147699442 - - hypothetical protein CICLE_v10003960mg, partial [Citrus clementina]
3 Hb_021443_050 0.1724525129 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002400_080 0.2033126166 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
5 Hb_001497_040 0.2122037672 - - hypothetical protein POPTR_0008s219701g, partial [Populus trichocarpa]
6 Hb_003913_040 0.2126760422 - - ferric reductase oxidase [Manihot esculenta]
7 Hb_005743_030 0.2142882566 - - hypothetical protein, partial [Pseudomonas fluorescens]
8 Hb_031201_010 0.214555645 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
9 Hb_007205_020 0.2160108135 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
10 Hb_003517_100 0.2195779998 transcription factor TF Family: GRAS -
11 Hb_002845_020 0.2205173815 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
12 Hb_006916_180 0.2207264207 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
13 Hb_119327_010 0.2229807229 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
14 Hb_053929_010 0.2245093821 - - hypothetical protein POPTR_0010s22320g [Populus trichocarpa]
15 Hb_004785_200 0.2246678915 - - PREDICTED: protein MKS1 [Jatropha curcas]
16 Hb_001866_100 0.2254533853 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
17 Hb_003007_030 0.2259389881 - - -
18 Hb_101449_010 0.2259959918 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
19 Hb_000203_210 0.2269132302 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
20 Hb_000318_400 0.2287092952 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000856_130 Hb_000856_130 Hb_004864_010 Hb_004864_010 Hb_000856_130--Hb_004864_010 Hb_021443_050 Hb_021443_050 Hb_000856_130--Hb_021443_050 Hb_002400_080 Hb_002400_080 Hb_000856_130--Hb_002400_080 Hb_001497_040 Hb_001497_040 Hb_000856_130--Hb_001497_040 Hb_003913_040 Hb_003913_040 Hb_000856_130--Hb_003913_040 Hb_005743_030 Hb_005743_030 Hb_000856_130--Hb_005743_030 Hb_004864_010--Hb_021443_050 Hb_007035_010 Hb_007035_010 Hb_004864_010--Hb_007035_010 Hb_031201_010 Hb_031201_010 Hb_004864_010--Hb_031201_010 Hb_001866_100 Hb_001866_100 Hb_004864_010--Hb_001866_100 Hb_007205_020 Hb_007205_020 Hb_004864_010--Hb_007205_020 Hb_000191_100 Hb_000191_100 Hb_021443_050--Hb_000191_100 Hb_016637_020 Hb_016637_020 Hb_021443_050--Hb_016637_020 Hb_021443_050--Hb_007205_020 Hb_170878_050 Hb_170878_050 Hb_021443_050--Hb_170878_050 Hb_003517_100 Hb_003517_100 Hb_021443_050--Hb_003517_100 Hb_002400_080--Hb_001497_040 Hb_002276_030 Hb_002276_030 Hb_002400_080--Hb_002276_030 Hb_000500_360 Hb_000500_360 Hb_002400_080--Hb_000500_360 Hb_001244_050 Hb_001244_050 Hb_002400_080--Hb_001244_050 Hb_002845_020 Hb_002845_020 Hb_002400_080--Hb_002845_020 Hb_000049_170 Hb_000049_170 Hb_002400_080--Hb_000049_170 Hb_032260_110 Hb_032260_110 Hb_001497_040--Hb_032260_110 Hb_002615_080 Hb_002615_080 Hb_001497_040--Hb_002615_080 Hb_002798_080 Hb_002798_080 Hb_001497_040--Hb_002798_080 Hb_001497_040--Hb_002276_030 Hb_006827_030 Hb_006827_030 Hb_001497_040--Hb_006827_030 Hb_001514_150 Hb_001514_150 Hb_003913_040--Hb_001514_150 Hb_006588_020 Hb_006588_020 Hb_003913_040--Hb_006588_020 Hb_005092_090 Hb_005092_090 Hb_003913_040--Hb_005092_090 Hb_001366_260 Hb_001366_260 Hb_003913_040--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_003913_040--Hb_000820_100 Hb_000009_390 Hb_000009_390 Hb_003913_040--Hb_000009_390 Hb_000318_400 Hb_000318_400 Hb_005743_030--Hb_000318_400 Hb_001005_040 Hb_001005_040 Hb_005743_030--Hb_001005_040 Hb_005743_030--Hb_004864_010 Hb_012023_010 Hb_012023_010 Hb_005743_030--Hb_012023_010 Hb_005743_030--Hb_021443_050 Hb_001534_040 Hb_001534_040 Hb_005743_030--Hb_001534_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0258761 0.108164 0.122294 0.0442877 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0467171 0 0.150803 0.283896

CAGE analysis