Hb_003913_040

Information

Type -
Description -
Location Contig3913: 25805-29353
Sequence    

Annotation

kegg
ID rcu:RCOM_1508880
description ferric-chelate reductase, putative (EC:1.6.3.1)
nr
ID ADR70889.1
description ferric reductase oxidase [Manihot esculenta]
swissprot
ID Q8VY13
description Ferric reduction oxidase 8, mitochondrial OS=Arabidopsis thaliana GN=FRO8 PE=2 SV=1
trembl
ID V9HZ06
description Ferric reductase oxidase OS=Manihot esculenta GN=FRO4 PE=2 SV=1
Gene Ontology
ID GO:0005886
description ferric reductase-like transmembrane component family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39201: 25826-29194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003913_040 0.0 - - ferric reductase oxidase [Manihot esculenta]
2 Hb_001514_150 0.0905449756 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
3 Hb_006588_020 0.1138309026 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
4 Hb_005092_090 0.1195910805 - - cold regulated protein [Manihot esculenta]
5 Hb_001366_260 0.1274662632 - - T4.15 [Malus x robusta]
6 Hb_000820_100 0.128103893 - - RNA-directed DNA polymerase [Arachis hypogaea]
7 Hb_000009_390 0.136106538 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
8 Hb_001009_060 0.1369502843 - - PREDICTED: 4-coumarate--CoA ligase-like 9 [Jatropha curcas]
9 Hb_000173_110 0.1384665279 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
10 Hb_011472_050 0.1420330841 - - -
11 Hb_010565_030 0.1429433467 - - hypothetical protein VITISV_006810 [Vitis vinifera]
12 Hb_001866_100 0.1433039314 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
13 Hb_001345_040 0.1434052103 - - hypothetical protein VITISV_015004 [Vitis vinifera]
14 Hb_000123_340 0.1477305948 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
15 Hb_001856_110 0.1506263971 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]
16 Hb_004864_010 0.1512262994 - - hypothetical protein CICLE_v10003960mg, partial [Citrus clementina]
17 Hb_007035_010 0.1533169304 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
18 Hb_009434_060 0.1539557104 - - T4.15 [Malus x robusta]
19 Hb_003683_200 0.1559464677 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
20 Hb_116784_020 0.1569226576 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_003913_040 Hb_003913_040 Hb_001514_150 Hb_001514_150 Hb_003913_040--Hb_001514_150 Hb_006588_020 Hb_006588_020 Hb_003913_040--Hb_006588_020 Hb_005092_090 Hb_005092_090 Hb_003913_040--Hb_005092_090 Hb_001366_260 Hb_001366_260 Hb_003913_040--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_003913_040--Hb_000820_100 Hb_000009_390 Hb_000009_390 Hb_003913_040--Hb_000009_390 Hb_001514_150--Hb_000009_390 Hb_001514_150--Hb_006588_020 Hb_001514_150--Hb_005092_090 Hb_001836_010 Hb_001836_010 Hb_001514_150--Hb_001836_010 Hb_007035_010 Hb_007035_010 Hb_001514_150--Hb_007035_010 Hb_006588_020--Hb_005092_090 Hb_001866_100 Hb_001866_100 Hb_006588_020--Hb_001866_100 Hb_001345_040 Hb_001345_040 Hb_006588_020--Hb_001345_040 Hb_006588_020--Hb_007035_010 Hb_000049_170 Hb_000049_170 Hb_006588_020--Hb_000049_170 Hb_006588_020--Hb_000009_390 Hb_000574_340 Hb_000574_340 Hb_005092_090--Hb_000574_340 Hb_005092_090--Hb_001345_040 Hb_116784_020 Hb_116784_020 Hb_005092_090--Hb_116784_020 Hb_005092_090--Hb_001366_260 Hb_012796_030 Hb_012796_030 Hb_005092_090--Hb_012796_030 Hb_001366_260--Hb_000820_100 Hb_001366_260--Hb_116784_020 Hb_067472_010 Hb_067472_010 Hb_001366_260--Hb_067472_010 Hb_007543_020 Hb_007543_020 Hb_001366_260--Hb_007543_020 Hb_000173_110 Hb_000173_110 Hb_001366_260--Hb_000173_110 Hb_000820_100--Hb_007543_020 Hb_004520_010 Hb_004520_010 Hb_000820_100--Hb_004520_010 Hb_000820_100--Hb_000173_110 Hb_000820_100--Hb_116784_020 Hb_000123_340 Hb_000123_340 Hb_000820_100--Hb_000123_340 Hb_000009_390--Hb_001866_100 Hb_002818_070 Hb_002818_070 Hb_000009_390--Hb_002818_070 Hb_001856_110 Hb_001856_110 Hb_000009_390--Hb_001856_110 Hb_000009_390--Hb_001836_010 Hb_000009_390--Hb_007035_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.141411 10.8119 6.86832 3.16518 0.0134092 0.0245998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.28268 0.667331 0.377746 7.93915 28.8308

CAGE analysis