Hb_012796_030

Information

Type -
Description -
Location Contig12796: 14696-16072
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_009613217.1
description PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID A0A0A9HRG5
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 046_G11r.ab1: 12335-21979

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012796_030 0.0 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
2 Hb_003440_080 0.0679403159 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_000289_090 0.0705170054 - - -
4 Hb_000574_340 0.0940926818 - - hypothetical protein RCOM_0901420 [Ricinus communis]
5 Hb_005092_090 0.1096210484 - - cold regulated protein [Manihot esculenta]
6 Hb_006787_070 0.1155884979 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
7 Hb_004994_200 0.1258162532 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
8 Hb_188075_010 0.1294193894 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
9 Hb_029510_060 0.1302108068 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
10 Hb_119832_010 0.1352440588 - - -
11 Hb_000027_230 0.135662526 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_010863_070 0.137770677 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
13 Hb_001345_040 0.1378831501 - - hypothetical protein VITISV_015004 [Vitis vinifera]
14 Hb_004312_020 0.1379101046 - - conserved hypothetical protein [Ricinus communis]
15 Hb_027337_130 0.1445373998 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
16 Hb_067472_010 0.1473010958 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
17 Hb_116784_020 0.1485508221 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
18 Hb_006588_020 0.149336226 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
19 Hb_000352_060 0.1507867441 - - RNA-directed DNA polymerase [Arachis hypogaea]
20 Hb_001250_030 0.1521671807 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012796_030 Hb_012796_030 Hb_003440_080 Hb_003440_080 Hb_012796_030--Hb_003440_080 Hb_000289_090 Hb_000289_090 Hb_012796_030--Hb_000289_090 Hb_000574_340 Hb_000574_340 Hb_012796_030--Hb_000574_340 Hb_005092_090 Hb_005092_090 Hb_012796_030--Hb_005092_090 Hb_006787_070 Hb_006787_070 Hb_012796_030--Hb_006787_070 Hb_004994_200 Hb_004994_200 Hb_012796_030--Hb_004994_200 Hb_003440_080--Hb_000574_340 Hb_003440_080--Hb_000289_090 Hb_000951_070 Hb_000951_070 Hb_003440_080--Hb_000951_070 Hb_119832_010 Hb_119832_010 Hb_003440_080--Hb_119832_010 Hb_027337_130 Hb_027337_130 Hb_003440_080--Hb_027337_130 Hb_000289_090--Hb_004994_200 Hb_010863_070 Hb_010863_070 Hb_000289_090--Hb_010863_070 Hb_000289_090--Hb_119832_010 Hb_004372_050 Hb_004372_050 Hb_000289_090--Hb_004372_050 Hb_003643_080 Hb_003643_080 Hb_000574_340--Hb_003643_080 Hb_000574_340--Hb_027337_130 Hb_000574_340--Hb_005092_090 Hb_188075_010 Hb_188075_010 Hb_000574_340--Hb_188075_010 Hb_006588_020 Hb_006588_020 Hb_005092_090--Hb_006588_020 Hb_001345_040 Hb_001345_040 Hb_005092_090--Hb_001345_040 Hb_116784_020 Hb_116784_020 Hb_005092_090--Hb_116784_020 Hb_001366_260 Hb_001366_260 Hb_005092_090--Hb_001366_260 Hb_006787_070--Hb_001345_040 Hb_006787_070--Hb_188075_010 Hb_006787_070--Hb_005092_090 Hb_002798_080 Hb_002798_080 Hb_006787_070--Hb_002798_080 Hb_004312_020 Hb_004312_020 Hb_006787_070--Hb_004312_020 Hb_000331_220 Hb_000331_220 Hb_004994_200--Hb_000331_220 Hb_002818_070 Hb_002818_070 Hb_004994_200--Hb_002818_070 Hb_004994_200--Hb_000574_340 Hb_001836_010 Hb_001836_010 Hb_004994_200--Hb_001836_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.275121 0.0890436 0.130005 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.10507 0.83552

CAGE analysis