Hb_006588_020

Information

Type transcription factor
Description TF Family: G2-like
Location Contig6588: 5556-8843
Sequence    

Annotation

kegg
ID rcu:RCOM_1172200
description DNA binding protein, putative
nr
ID XP_002517855.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9SIV3
description Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2 SV=2
trembl
ID B9RVT6
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1172200 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription activator glk1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52864: 5796-8903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006588_020 0.0 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
2 Hb_005092_090 0.0789873957 - - cold regulated protein [Manihot esculenta]
3 Hb_001866_100 0.0840411072 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
4 Hb_001345_040 0.0885529798 - - hypothetical protein VITISV_015004 [Vitis vinifera]
5 Hb_007035_010 0.091973671 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
6 Hb_000049_170 0.0977801977 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000009_390 0.1061022095 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
8 Hb_001514_150 0.1077865524 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
9 Hb_188075_010 0.110276848 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
10 Hb_003913_040 0.1138309026 - - ferric reductase oxidase [Manihot esculenta]
11 Hb_000574_340 0.1145250382 - - hypothetical protein RCOM_0901420 [Ricinus communis]
12 Hb_006827_030 0.1158656959 - - oligopeptide transporter, putative [Ricinus communis]
13 Hb_001836_010 0.1165100318 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
14 Hb_002615_080 0.1240630639 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
15 Hb_001652_130 0.1252157221 - - hypothetical protein B456_002G193900 [Gossypium raimondii]
16 Hb_000732_180 0.1269270849 - - Uncharacterized protein TCM_030007 [Theobroma cacao]
17 Hb_002845_020 0.127425673 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
18 Hb_004312_020 0.1292333414 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003643_080 0.1317374734 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
20 Hb_006787_070 0.131990512 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_006588_020 Hb_006588_020 Hb_005092_090 Hb_005092_090 Hb_006588_020--Hb_005092_090 Hb_001866_100 Hb_001866_100 Hb_006588_020--Hb_001866_100 Hb_001345_040 Hb_001345_040 Hb_006588_020--Hb_001345_040 Hb_007035_010 Hb_007035_010 Hb_006588_020--Hb_007035_010 Hb_000049_170 Hb_000049_170 Hb_006588_020--Hb_000049_170 Hb_000009_390 Hb_000009_390 Hb_006588_020--Hb_000009_390 Hb_000574_340 Hb_000574_340 Hb_005092_090--Hb_000574_340 Hb_005092_090--Hb_001345_040 Hb_116784_020 Hb_116784_020 Hb_005092_090--Hb_116784_020 Hb_001366_260 Hb_001366_260 Hb_005092_090--Hb_001366_260 Hb_012796_030 Hb_012796_030 Hb_005092_090--Hb_012796_030 Hb_001866_100--Hb_007035_010 Hb_001866_100--Hb_000009_390 Hb_002845_020 Hb_002845_020 Hb_001866_100--Hb_002845_020 Hb_007205_020 Hb_007205_020 Hb_001866_100--Hb_007205_020 Hb_031862_200 Hb_031862_200 Hb_001866_100--Hb_031862_200 Hb_188075_010 Hb_188075_010 Hb_001345_040--Hb_188075_010 Hb_000352_060 Hb_000352_060 Hb_001345_040--Hb_000352_060 Hb_004312_020 Hb_004312_020 Hb_001345_040--Hb_004312_020 Hb_006787_070 Hb_006787_070 Hb_001345_040--Hb_006787_070 Hb_006827_030 Hb_006827_030 Hb_007035_010--Hb_006827_030 Hb_003680_010 Hb_003680_010 Hb_007035_010--Hb_003680_010 Hb_001836_010 Hb_001836_010 Hb_007035_010--Hb_001836_010 Hb_007035_010--Hb_000009_390 Hb_000049_170--Hb_002845_020 Hb_000049_170--Hb_006827_030 Hb_000049_170--Hb_001866_100 Hb_000500_360 Hb_000500_360 Hb_000049_170--Hb_000500_360 Hb_171168_010 Hb_171168_010 Hb_000049_170--Hb_171168_010 Hb_002818_070 Hb_002818_070 Hb_000009_390--Hb_002818_070 Hb_001856_110 Hb_001856_110 Hb_000009_390--Hb_001856_110 Hb_000009_390--Hb_001836_010 Hb_001514_150 Hb_001514_150 Hb_000009_390--Hb_001514_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0111883 25.112 21.998 10.9434 0.0112061 0.00979789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0763433 0.0400443 0 20.0637 76.3301

CAGE analysis