Hb_000352_060

Information

Type -
Description -
Location Contig352: 75014-77291
Sequence    

Annotation

kegg
ID bdi:104583892
description uncharacterized LOC104583892
nr
ID AEL30343.1
description RNA-directed DNA polymerase [Arachis hypogaea]
swissprot
ID -
description -
trembl
ID G0Y6T3
description RNA-directed DNA polymerase OS=Arachis hypogaea GN=303L13_3 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_060 0.0 - - RNA-directed DNA polymerase [Arachis hypogaea]
2 Hb_116784_020 0.0900730965 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
3 Hb_011649_030 0.0996168817 - - hypothetical protein [Vitis hybrid cultivar]
4 Hb_001345_040 0.104097178 - - hypothetical protein VITISV_015004 [Vitis vinifera]
5 Hb_000173_110 0.1180024989 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
6 Hb_067472_010 0.1235495404 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
7 Hb_001468_040 0.1258925387 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
8 Hb_006787_070 0.1272118449 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
9 Hb_000820_100 0.1288242656 - - RNA-directed DNA polymerase [Arachis hypogaea]
10 Hb_001366_260 0.1301424945 - - T4.15 [Malus x robusta]
11 Hb_000027_230 0.1301644221 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_041813_040 0.1303309247 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
13 Hb_005092_090 0.1327292277 - - cold regulated protein [Manihot esculenta]
14 Hb_007543_020 0.1342256984 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
15 Hb_000123_340 0.1350169837 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
16 Hb_004312_020 0.1368906161 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000574_330 0.1389729157 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
18 Hb_001385_070 0.1398586778 - - hypothetical protein VITISV_019194 [Vitis vinifera]
19 Hb_000237_170 0.1437901908 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
20 Hb_188075_010 0.1464834609 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]

Gene co-expression network

sample Hb_000352_060 Hb_000352_060 Hb_116784_020 Hb_116784_020 Hb_000352_060--Hb_116784_020 Hb_011649_030 Hb_011649_030 Hb_000352_060--Hb_011649_030 Hb_001345_040 Hb_001345_040 Hb_000352_060--Hb_001345_040 Hb_000173_110 Hb_000173_110 Hb_000352_060--Hb_000173_110 Hb_067472_010 Hb_067472_010 Hb_000352_060--Hb_067472_010 Hb_001468_040 Hb_001468_040 Hb_000352_060--Hb_001468_040 Hb_116784_020--Hb_067472_010 Hb_001366_260 Hb_001366_260 Hb_116784_020--Hb_001366_260 Hb_116784_020--Hb_001468_040 Hb_000027_230 Hb_000027_230 Hb_116784_020--Hb_000027_230 Hb_000820_100 Hb_000820_100 Hb_116784_020--Hb_000820_100 Hb_003291_030 Hb_003291_030 Hb_011649_030--Hb_003291_030 Hb_001385_070 Hb_001385_070 Hb_011649_030--Hb_001385_070 Hb_127552_050 Hb_127552_050 Hb_011649_030--Hb_127552_050 Hb_041813_040 Hb_041813_040 Hb_011649_030--Hb_041813_040 Hb_000574_330 Hb_000574_330 Hb_011649_030--Hb_000574_330 Hb_006588_020 Hb_006588_020 Hb_001345_040--Hb_006588_020 Hb_188075_010 Hb_188075_010 Hb_001345_040--Hb_188075_010 Hb_005092_090 Hb_005092_090 Hb_001345_040--Hb_005092_090 Hb_004312_020 Hb_004312_020 Hb_001345_040--Hb_004312_020 Hb_006787_070 Hb_006787_070 Hb_001345_040--Hb_006787_070 Hb_000123_340 Hb_000123_340 Hb_000173_110--Hb_000123_340 Hb_000173_110--Hb_001366_260 Hb_000173_110--Hb_000820_100 Hb_010565_030 Hb_010565_030 Hb_000173_110--Hb_010565_030 Hb_000173_110--Hb_116784_020 Hb_011472_050 Hb_011472_050 Hb_000173_110--Hb_011472_050 Hb_067472_010--Hb_001366_260 Hb_067472_010--Hb_001468_040 Hb_067472_010--Hb_011472_050 Hb_067472_010--Hb_000820_100 Hb_002013_030 Hb_002013_030 Hb_067472_010--Hb_002013_030 Hb_000237_170 Hb_000237_170 Hb_001468_040--Hb_000237_170 Hb_001468_040--Hb_001366_260 Hb_001468_040--Hb_004312_020 Hb_002983_090 Hb_002983_090 Hb_001468_040--Hb_002983_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0414045 1.1632 0.773029 0.774344 0.156576 0.0364439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0473722 0 0 0.882929 5.20283

CAGE analysis