Hb_041813_040

Information

Type -
Description -
Location Contig41813: 18303-21750
Sequence    

Annotation

kegg
ID mtr:MTR_1g006060
description NADH-ubiquinone oxidoreductase chain
nr
ID -
description NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
swissprot
ID Q37680
description NADH-ubiquinone oxidoreductase chain 5 OS=Triticum aestivum GN=ND5 PE=3 SV=1
trembl
ID Q05896
description NADH-ubiquinone oxidoreductase chain 5 OS=Beta vulgaris subsp. vulgaris PE=3 SV=1
Gene Ontology
ID GO:0005743
description nadh dehydrogenase subunit 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041813_040 0.0 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
2 Hb_000574_330 0.0917612126 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
3 Hb_011649_030 0.1166880038 - - hypothetical protein [Vitis hybrid cultivar]
4 Hb_102602_020 0.1268732106 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
5 Hb_000352_060 0.1303309247 - - RNA-directed DNA polymerase [Arachis hypogaea]
6 Hb_127552_050 0.1305452441 - - hypothetical protein VITISV_030752 [Vitis vinifera]
7 Hb_067472_010 0.1415235305 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
8 Hb_042463_010 0.1422366177 - - cytochrome c oxidase subunit 2-1 (mitochondrion) (mitochondrion) [Brassica juncea var. tumida]
9 Hb_001385_070 0.1430472885 - - hypothetical protein VITISV_019194 [Vitis vinifera]
10 Hb_016734_040 0.1475700364 - - abhydrolase domain containing, putative [Ricinus communis]
11 Hb_006787_070 0.1531974255 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
12 Hb_000123_340 0.1590995217 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
13 Hb_009851_090 0.1591715108 - - Protein ABIL2, putative [Ricinus communis]
14 Hb_003291_030 0.1596321931 - - Gag-pol protein, putative [Solanum demissum]
15 Hb_041813_060 0.1628869818 - - ribosomal protein L10 (mitochondrion) [Ricinus communis]
16 Hb_003994_070 0.1629355602 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
17 Hb_004312_020 0.1629893493 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004520_010 0.1633053986 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
19 Hb_000820_100 0.1633602223 - - RNA-directed DNA polymerase [Arachis hypogaea]
20 Hb_002983_090 0.1653368805 - - Altered inheritance of mitochondria protein 32 [Glycine soja]

Gene co-expression network

sample Hb_041813_040 Hb_041813_040 Hb_000574_330 Hb_000574_330 Hb_041813_040--Hb_000574_330 Hb_011649_030 Hb_011649_030 Hb_041813_040--Hb_011649_030 Hb_102602_020 Hb_102602_020 Hb_041813_040--Hb_102602_020 Hb_000352_060 Hb_000352_060 Hb_041813_040--Hb_000352_060 Hb_127552_050 Hb_127552_050 Hb_041813_040--Hb_127552_050 Hb_067472_010 Hb_067472_010 Hb_041813_040--Hb_067472_010 Hb_000574_330--Hb_127552_050 Hb_000574_330--Hb_011649_030 Hb_001385_070 Hb_001385_070 Hb_000574_330--Hb_001385_070 Hb_000123_340 Hb_000123_340 Hb_000574_330--Hb_000123_340 Hb_004109_130 Hb_004109_130 Hb_000574_330--Hb_004109_130 Hb_011649_030--Hb_000352_060 Hb_003291_030 Hb_003291_030 Hb_011649_030--Hb_003291_030 Hb_011649_030--Hb_001385_070 Hb_011649_030--Hb_127552_050 Hb_006405_040 Hb_006405_040 Hb_102602_020--Hb_006405_040 Hb_102602_020--Hb_001385_070 Hb_102602_020--Hb_127552_050 Hb_000820_100 Hb_000820_100 Hb_102602_020--Hb_000820_100 Hb_007543_020 Hb_007543_020 Hb_102602_020--Hb_007543_020 Hb_116784_020 Hb_116784_020 Hb_000352_060--Hb_116784_020 Hb_001345_040 Hb_001345_040 Hb_000352_060--Hb_001345_040 Hb_000173_110 Hb_000173_110 Hb_000352_060--Hb_000173_110 Hb_000352_060--Hb_067472_010 Hb_001468_040 Hb_001468_040 Hb_000352_060--Hb_001468_040 Hb_127552_050--Hb_001385_070 Hb_127552_050--Hb_000123_340 Hb_004520_010 Hb_004520_010 Hb_127552_050--Hb_004520_010 Hb_067472_010--Hb_116784_020 Hb_001366_260 Hb_001366_260 Hb_067472_010--Hb_001366_260 Hb_067472_010--Hb_001468_040 Hb_011472_050 Hb_011472_050 Hb_067472_010--Hb_011472_050 Hb_067472_010--Hb_000820_100 Hb_002013_030 Hb_002013_030 Hb_067472_010--Hb_002013_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.119876 1.35433 0.567523 1.38231 0.0913576 0.101508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0191755 0 0.172306 1.14508 7.65172

CAGE analysis