Hb_006405_040

Information

Type -
Description -
Location Contig6405: 48294-52750
Sequence    

Annotation

kegg
ID zma:103648418
description uncharacterized LOC103648418
nr
ID CAN76793.1
description hypothetical protein VITISV_026680 [Vitis vinifera]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A5BEK1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026680 PE=4 SV=1
Gene Ontology
ID GO:0043170
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52162: 32261-76834 , PASA_asmbl_52163: 32215-76799 , PASA_asmbl_52165: 53442-53915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006405_040 0.0 - - hypothetical protein VITISV_026680 [Vitis vinifera]
2 Hb_102602_020 0.1356118001 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
3 Hb_001385_070 0.1517052004 - - hypothetical protein VITISV_019194 [Vitis vinifera]
4 Hb_000803_230 0.1613443705 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
5 Hb_144027_010 0.1739020251 - - -
6 Hb_007543_020 0.1754707817 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
7 Hb_003900_040 0.1782035743 - - hypothetical protein [Lotus japonicus]
8 Hb_001383_080 0.183226103 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
9 Hb_000518_040 0.1871880604 - - -
10 Hb_000820_100 0.1874020923 - - RNA-directed DNA polymerase [Arachis hypogaea]
11 Hb_004899_210 0.1896941757 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
12 Hb_067472_010 0.1913629683 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
13 Hb_000123_340 0.1918214967 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
14 Hb_041813_040 0.1928616945 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
15 Hb_127552_050 0.1940275383 - - hypothetical protein VITISV_030752 [Vitis vinifera]
16 Hb_001250_030 0.194031616 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011649_030 0.194623216 - - hypothetical protein [Vitis hybrid cultivar]
18 Hb_001174_050 0.1947652109 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_002013_030 0.1964805255 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
20 Hb_010863_070 0.1982640336 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]

Gene co-expression network

sample Hb_006405_040 Hb_006405_040 Hb_102602_020 Hb_102602_020 Hb_006405_040--Hb_102602_020 Hb_001385_070 Hb_001385_070 Hb_006405_040--Hb_001385_070 Hb_000803_230 Hb_000803_230 Hb_006405_040--Hb_000803_230 Hb_144027_010 Hb_144027_010 Hb_006405_040--Hb_144027_010 Hb_007543_020 Hb_007543_020 Hb_006405_040--Hb_007543_020 Hb_003900_040 Hb_003900_040 Hb_006405_040--Hb_003900_040 Hb_041813_040 Hb_041813_040 Hb_102602_020--Hb_041813_040 Hb_102602_020--Hb_001385_070 Hb_127552_050 Hb_127552_050 Hb_102602_020--Hb_127552_050 Hb_000820_100 Hb_000820_100 Hb_102602_020--Hb_000820_100 Hb_102602_020--Hb_007543_020 Hb_001385_070--Hb_127552_050 Hb_000123_340 Hb_000123_340 Hb_001385_070--Hb_000123_340 Hb_011649_030 Hb_011649_030 Hb_001385_070--Hb_011649_030 Hb_001793_040 Hb_001793_040 Hb_001385_070--Hb_001793_040 Hb_000574_330 Hb_000574_330 Hb_001385_070--Hb_000574_330 Hb_004520_010 Hb_004520_010 Hb_001385_070--Hb_004520_010 Hb_005920_030 Hb_005920_030 Hb_000803_230--Hb_005920_030 Hb_000346_050 Hb_000346_050 Hb_000803_230--Hb_000346_050 Hb_019654_170 Hb_019654_170 Hb_000803_230--Hb_019654_170 Hb_043792_030 Hb_043792_030 Hb_000803_230--Hb_043792_030 Hb_001174_050 Hb_001174_050 Hb_000803_230--Hb_001174_050 Hb_003994_070 Hb_003994_070 Hb_000803_230--Hb_003994_070 Hb_004899_210 Hb_004899_210 Hb_144027_010--Hb_004899_210 Hb_144027_010--Hb_003900_040 Hb_117001_010 Hb_117001_010 Hb_144027_010--Hb_117001_010 Hb_001383_080 Hb_001383_080 Hb_144027_010--Hb_001383_080 Hb_017640_010 Hb_017640_010 Hb_144027_010--Hb_017640_010 Hb_003169_040 Hb_003169_040 Hb_144027_010--Hb_003169_040 Hb_007543_020--Hb_000820_100 Hb_001366_260 Hb_001366_260 Hb_007543_020--Hb_001366_260 Hb_116784_020 Hb_116784_020 Hb_007543_020--Hb_116784_020 Hb_009434_060 Hb_009434_060 Hb_007543_020--Hb_009434_060 Hb_000060_130 Hb_000060_130 Hb_007543_020--Hb_000060_130 Hb_007543_020--Hb_000123_340 Hb_003900_040--Hb_004899_210 Hb_180214_010 Hb_180214_010 Hb_003900_040--Hb_180214_010 Hb_032717_090 Hb_032717_090 Hb_003900_040--Hb_032717_090 Hb_001250_030 Hb_001250_030 Hb_003900_040--Hb_001250_030 Hb_003900_040--Hb_003169_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.194887 0.0155642 0.0442628 0.024017 0.0180997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00902772 0.0173264 0.114448 0.734586

CAGE analysis