Hb_001383_080

Information

Type -
Description -
Location Contig1383: 107515-123255
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID CAD41450.1
description OSJNBa0019D11.8 [Oryza sativa Japonica Group]
swissprot
ID P10401
description Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID Q7XUA3
description OSJNBa0019D11.8 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0019D11.8 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001383_080 0.0 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
2 Hb_003414_040 0.1121704456 - - hypothetical protein VITISV_016691 [Vitis vinifera]
3 Hb_001250_030 0.1268809033 - - conserved hypothetical protein [Ricinus communis]
4 Hb_019654_170 0.129133062 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
5 Hb_000432_020 0.1317036016 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
6 Hb_000346_050 0.133166388 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
7 Hb_003900_040 0.1351893483 - - hypothetical protein [Lotus japonicus]
8 Hb_150516_010 0.1372050883 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
9 Hb_003169_040 0.1381662001 - - -
10 Hb_180214_010 0.1383249299 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
11 Hb_005623_060 0.139048564 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_144027_010 0.1400106755 - - -
13 Hb_000522_030 0.1429184447 - - hypothetical protein VITISV_006017 [Vitis vinifera]
14 Hb_023738_010 0.1437368905 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
15 Hb_001385_070 0.1452585643 - - hypothetical protein VITISV_019194 [Vitis vinifera]
16 Hb_003311_020 0.1520268317 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007543_020 0.1536973286 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
18 Hb_004374_090 0.1538516362 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
19 Hb_043792_030 0.154482347 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
20 Hb_004899_210 0.158632944 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]

Gene co-expression network

sample Hb_001383_080 Hb_001383_080 Hb_003414_040 Hb_003414_040 Hb_001383_080--Hb_003414_040 Hb_001250_030 Hb_001250_030 Hb_001383_080--Hb_001250_030 Hb_019654_170 Hb_019654_170 Hb_001383_080--Hb_019654_170 Hb_000432_020 Hb_000432_020 Hb_001383_080--Hb_000432_020 Hb_000346_050 Hb_000346_050 Hb_001383_080--Hb_000346_050 Hb_003900_040 Hb_003900_040 Hb_001383_080--Hb_003900_040 Hb_003414_040--Hb_000432_020 Hb_093388_010 Hb_093388_010 Hb_003414_040--Hb_093388_010 Hb_003414_040--Hb_001250_030 Hb_003311_020 Hb_003311_020 Hb_003414_040--Hb_003311_020 Hb_001793_040 Hb_001793_040 Hb_003414_040--Hb_001793_040 Hb_001250_030--Hb_093388_010 Hb_029510_060 Hb_029510_060 Hb_001250_030--Hb_029510_060 Hb_023738_010 Hb_023738_010 Hb_001250_030--Hb_023738_010 Hb_001250_030--Hb_003311_020 Hb_001250_030--Hb_000432_020 Hb_043792_030 Hb_043792_030 Hb_019654_170--Hb_043792_030 Hb_019654_170--Hb_000346_050 Hb_001856_280 Hb_001856_280 Hb_019654_170--Hb_001856_280 Hb_005920_030 Hb_005920_030 Hb_019654_170--Hb_005920_030 Hb_019654_170--Hb_003311_020 Hb_020831_070 Hb_020831_070 Hb_019654_170--Hb_020831_070 Hb_007533_050 Hb_007533_050 Hb_000432_020--Hb_007533_050 Hb_000432_020--Hb_003311_020 Hb_000432_020--Hb_093388_010 Hb_151401_010 Hb_151401_010 Hb_000432_020--Hb_151401_010 Hb_000346_050--Hb_043792_030 Hb_000346_050--Hb_001856_280 Hb_003927_020 Hb_003927_020 Hb_000346_050--Hb_003927_020 Hb_150516_010 Hb_150516_010 Hb_000346_050--Hb_150516_010 Hb_000167_070 Hb_000167_070 Hb_000346_050--Hb_000167_070 Hb_004899_210 Hb_004899_210 Hb_003900_040--Hb_004899_210 Hb_144027_010 Hb_144027_010 Hb_003900_040--Hb_144027_010 Hb_180214_010 Hb_180214_010 Hb_003900_040--Hb_180214_010 Hb_032717_090 Hb_032717_090 Hb_003900_040--Hb_032717_090 Hb_003900_040--Hb_001250_030 Hb_003169_040 Hb_003169_040 Hb_003900_040--Hb_003169_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00266536 0.339121 0.146459 0.0463034 0.00765304 0.0256156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0183249 0.330213 2.61844

CAGE analysis