Hb_003169_040

Information

Type -
Description -
Location Contig3169: 81066-87167
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33335: 82996-83254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003169_040 0.0 - - -
2 Hb_000512_050 0.0837547714 - - hypothetical protein VITISV_005640 [Vitis vinifera]
3 Hb_005623_060 0.0912054867 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_180214_010 0.1166077413 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
5 Hb_150516_010 0.1291703238 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
6 Hb_032717_090 0.1332914844 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003900_040 0.1333743672 - - hypothetical protein [Lotus japonicus]
8 Hb_006040_150 0.1364163991 - - -
9 Hb_001383_080 0.1381662001 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
10 Hb_008642_050 0.1402383489 - - -
11 Hb_144027_010 0.1446575475 - - -
12 Hb_001250_030 0.1449292563 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004899_210 0.1464143669 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
14 Hb_017640_010 0.1489128889 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
15 Hb_080033_020 0.151801154 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
16 Hb_007575_010 0.1539535044 - - PREDICTED: cytochrome P450 71A1 [Vitis vinifera]
17 Hb_045785_010 0.1546884114 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
18 Hb_047923_030 0.1575827098 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
19 Hb_023738_010 0.1610378181 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
20 Hb_027917_010 0.1612861467 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]

Gene co-expression network

sample Hb_003169_040 Hb_003169_040 Hb_000512_050 Hb_000512_050 Hb_003169_040--Hb_000512_050 Hb_005623_060 Hb_005623_060 Hb_003169_040--Hb_005623_060 Hb_180214_010 Hb_180214_010 Hb_003169_040--Hb_180214_010 Hb_150516_010 Hb_150516_010 Hb_003169_040--Hb_150516_010 Hb_032717_090 Hb_032717_090 Hb_003169_040--Hb_032717_090 Hb_003900_040 Hb_003900_040 Hb_003169_040--Hb_003900_040 Hb_000512_050--Hb_005623_060 Hb_080033_020 Hb_080033_020 Hb_000512_050--Hb_080033_020 Hb_000512_050--Hb_180214_010 Hb_000512_050--Hb_150516_010 Hb_003302_010 Hb_003302_010 Hb_000512_050--Hb_003302_010 Hb_005623_060--Hb_150516_010 Hb_000522_030 Hb_000522_030 Hb_005623_060--Hb_000522_030 Hb_005623_060--Hb_080033_020 Hb_014109_020 Hb_014109_020 Hb_005623_060--Hb_014109_020 Hb_180214_010--Hb_032717_090 Hb_180214_010--Hb_003900_040 Hb_180214_010--Hb_005623_060 Hb_001383_080 Hb_001383_080 Hb_180214_010--Hb_001383_080 Hb_150516_010--Hb_000522_030 Hb_011931_090 Hb_011931_090 Hb_150516_010--Hb_011931_090 Hb_000405_010 Hb_000405_010 Hb_150516_010--Hb_000405_010 Hb_000346_050 Hb_000346_050 Hb_150516_010--Hb_000346_050 Hb_019654_170 Hb_019654_170 Hb_150516_010--Hb_019654_170 Hb_032717_090--Hb_003900_040 Hb_008680_010 Hb_008680_010 Hb_032717_090--Hb_008680_010 Hb_032717_090--Hb_001383_080 Hb_004235_020 Hb_004235_020 Hb_032717_090--Hb_004235_020 Hb_004899_210 Hb_004899_210 Hb_003900_040--Hb_004899_210 Hb_144027_010 Hb_144027_010 Hb_003900_040--Hb_144027_010 Hb_001250_030 Hb_001250_030 Hb_003900_040--Hb_001250_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.165053 0.0527841 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.077318 0.877367

CAGE analysis