Hb_144027_010

Information

Type -
Description -
Location Contig144027: 22-954
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144027_010 0.0 - - -
2 Hb_004899_210 0.1112706081 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
3 Hb_003900_040 0.1197000273 - - hypothetical protein [Lotus japonicus]
4 Hb_117001_010 0.1299723353 - - -
5 Hb_001383_080 0.1400106755 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
6 Hb_017640_010 0.1402904761 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
7 Hb_003169_040 0.1446575475 - - -
8 Hb_007543_020 0.155295565 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
9 Hb_001250_030 0.1578781145 - - conserved hypothetical protein [Ricinus communis]
10 Hb_045785_010 0.1588598156 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
11 Hb_000518_040 0.1643394937 - - -
12 Hb_032717_090 0.1644321625 - - conserved hypothetical protein [Ricinus communis]
13 Hb_023738_010 0.1666607373 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
14 Hb_002687_070 0.1673935743 - - polyprotein [Ananas comosus]
15 Hb_000060_130 0.168518769 - - -
16 Hb_180214_010 0.1692678718 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
17 Hb_007575_010 0.1702124444 - - PREDICTED: cytochrome P450 71A1 [Vitis vinifera]
18 Hb_008642_050 0.1708075149 - - -
19 Hb_029510_060 0.1726002378 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
20 Hb_007575_020 0.1726839269 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_144027_010 Hb_144027_010 Hb_004899_210 Hb_004899_210 Hb_144027_010--Hb_004899_210 Hb_003900_040 Hb_003900_040 Hb_144027_010--Hb_003900_040 Hb_117001_010 Hb_117001_010 Hb_144027_010--Hb_117001_010 Hb_001383_080 Hb_001383_080 Hb_144027_010--Hb_001383_080 Hb_017640_010 Hb_017640_010 Hb_144027_010--Hb_017640_010 Hb_003169_040 Hb_003169_040 Hb_144027_010--Hb_003169_040 Hb_004899_210--Hb_003900_040 Hb_007575_020 Hb_007575_020 Hb_004899_210--Hb_007575_020 Hb_001250_030 Hb_001250_030 Hb_004899_210--Hb_001250_030 Hb_008642_050 Hb_008642_050 Hb_004899_210--Hb_008642_050 Hb_004899_210--Hb_017640_010 Hb_180214_010 Hb_180214_010 Hb_003900_040--Hb_180214_010 Hb_032717_090 Hb_032717_090 Hb_003900_040--Hb_032717_090 Hb_003900_040--Hb_001250_030 Hb_003900_040--Hb_003169_040 Hb_000518_040 Hb_000518_040 Hb_117001_010--Hb_000518_040 Hb_045785_010 Hb_045785_010 Hb_117001_010--Hb_045785_010 Hb_117001_010--Hb_004899_210 Hb_117001_010--Hb_007575_020 Hb_104735_020 Hb_104735_020 Hb_117001_010--Hb_104735_020 Hb_003414_040 Hb_003414_040 Hb_001383_080--Hb_003414_040 Hb_001383_080--Hb_001250_030 Hb_019654_170 Hb_019654_170 Hb_001383_080--Hb_019654_170 Hb_000432_020 Hb_000432_020 Hb_001383_080--Hb_000432_020 Hb_000346_050 Hb_000346_050 Hb_001383_080--Hb_000346_050 Hb_001383_080--Hb_003900_040 Hb_007575_010 Hb_007575_010 Hb_017640_010--Hb_007575_010 Hb_144838_010 Hb_144838_010 Hb_017640_010--Hb_144838_010 Hb_000672_130 Hb_000672_130 Hb_017640_010--Hb_000672_130 Hb_099878_040 Hb_099878_040 Hb_017640_010--Hb_099878_040 Hb_008680_010 Hb_008680_010 Hb_017640_010--Hb_008680_010 Hb_000512_050 Hb_000512_050 Hb_003169_040--Hb_000512_050 Hb_005623_060 Hb_005623_060 Hb_003169_040--Hb_005623_060 Hb_003169_040--Hb_180214_010 Hb_150516_010 Hb_150516_010 Hb_003169_040--Hb_150516_010 Hb_003169_040--Hb_032717_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0521265 3.48322 0.701282 0.180808 0.127364 0.0762611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.1716 0.854642 12.9581

CAGE analysis