Hb_117001_010

Information

Type -
Description -
Location Contig117001: 7-639
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117001_010 0.0 - - -
2 Hb_144027_010 0.1299723353 - - -
3 Hb_000518_040 0.154435408 - - -
4 Hb_045785_010 0.174635786 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
5 Hb_004899_210 0.1780205729 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
6 Hb_007575_020 0.1975564107 - - cytochrome P450, putative [Ricinus communis]
7 Hb_104735_020 0.1981460782 - - ATPase subunit 4 (mitochondrion) [Hevea brasiliensis]
8 Hb_003900_040 0.1986725165 - - hypothetical protein [Lotus japonicus]
9 Hb_008642_050 0.2055698138 - - -
10 Hb_017640_010 0.2079834968 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
11 Hb_006043_030 0.2098663189 - - polyprotein [Citrus endogenous pararetrovirus]
12 Hb_042463_050 0.2108633008 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007543_020 0.2121033555 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
14 Hb_006040_150 0.2123413057 - - -
15 Hb_005401_010 0.2137239078 - - -
16 Hb_005466_010 0.2154336341 - - ATPase subunit 6, partial (mitochondrion) [Celastrus scandens]
17 Hb_000136_080 0.2170716323 - - hypothetical protein AALP_AA8G499800 [Arabis alpina]
18 Hb_000060_130 0.2175453883 - - -
19 Hb_141990_020 0.2201478232 - - RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement protein; Short=MP; Contains: RecName: Full=Capsid protein; Short=CP; Contains: RecName: Full=Aspartic protease; Short=PR; Contains: RecName: Full=Reverse transcriptase; Short=RT [Petunia vein clearing virus isolate Hohn]
20 Hb_003169_040 0.2235691854 - - -

Gene co-expression network

sample Hb_117001_010 Hb_117001_010 Hb_144027_010 Hb_144027_010 Hb_117001_010--Hb_144027_010 Hb_000518_040 Hb_000518_040 Hb_117001_010--Hb_000518_040 Hb_045785_010 Hb_045785_010 Hb_117001_010--Hb_045785_010 Hb_004899_210 Hb_004899_210 Hb_117001_010--Hb_004899_210 Hb_007575_020 Hb_007575_020 Hb_117001_010--Hb_007575_020 Hb_104735_020 Hb_104735_020 Hb_117001_010--Hb_104735_020 Hb_144027_010--Hb_004899_210 Hb_003900_040 Hb_003900_040 Hb_144027_010--Hb_003900_040 Hb_001383_080 Hb_001383_080 Hb_144027_010--Hb_001383_080 Hb_017640_010 Hb_017640_010 Hb_144027_010--Hb_017640_010 Hb_003169_040 Hb_003169_040 Hb_144027_010--Hb_003169_040 Hb_000518_040--Hb_104735_020 Hb_000518_040--Hb_144027_010 Hb_006405_040 Hb_006405_040 Hb_000518_040--Hb_006405_040 Hb_062273_010 Hb_062273_010 Hb_000518_040--Hb_062273_010 Hb_072212_020 Hb_072212_020 Hb_000518_040--Hb_072212_020 Hb_008642_050 Hb_008642_050 Hb_045785_010--Hb_008642_050 Hb_045785_010--Hb_007575_020 Hb_045785_010--Hb_004899_210 Hb_045785_010--Hb_017640_010 Hb_045785_010--Hb_003169_040 Hb_045785_010--Hb_003900_040 Hb_004899_210--Hb_003900_040 Hb_004899_210--Hb_007575_020 Hb_001250_030 Hb_001250_030 Hb_004899_210--Hb_001250_030 Hb_004899_210--Hb_008642_050 Hb_004899_210--Hb_017640_010 Hb_000269_040 Hb_000269_040 Hb_007575_020--Hb_000269_040 Hb_000289_090 Hb_000289_090 Hb_007575_020--Hb_000289_090 Hb_007575_020--Hb_008642_050 Hb_007575_020--Hb_017640_010 Hb_042463_020 Hb_042463_020 Hb_104735_020--Hb_042463_020 Hb_034168_070 Hb_034168_070 Hb_104735_020--Hb_034168_070 Hb_104735_020--Hb_062273_010 Hb_104735_020--Hb_072212_020 Hb_034168_010 Hb_034168_010 Hb_104735_020--Hb_034168_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.430746 3.84464 0.586924 0.0460618 0.182338 0.0821754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.146298 0.484313 9.38418

CAGE analysis