Hb_000289_090

Information

Type -
Description -
Location Contig289: 131234-132431
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000289_090 0.0 - - -
2 Hb_012796_030 0.0705170054 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
3 Hb_003440_080 0.1080904621 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_004994_200 0.1120854395 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
5 Hb_010863_070 0.1186530091 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
6 Hb_119832_010 0.1267743793 - - -
7 Hb_004372_050 0.1359358511 - - putative receptor-like protein kinase [Morus notabilis]
8 Hb_000311_110 0.1365613138 - - ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_007575_020 0.139671954 - - cytochrome P450, putative [Ricinus communis]
10 Hb_000574_340 0.1409173741 - - hypothetical protein RCOM_0901420 [Ricinus communis]
11 Hb_004899_210 0.1478162534 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
12 Hb_005092_090 0.1520706939 - - cold regulated protein [Manihot esculenta]
13 Hb_029510_060 0.1525042712 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
14 Hb_001452_090 0.1548758863 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
15 Hb_000027_230 0.1637072485 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
16 Hb_006787_070 0.1647634938 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
17 Hb_002631_110 0.1668368135 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
18 Hb_172426_010 0.1670483236 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
19 Hb_000060_130 0.1676466509 - - -
20 Hb_067472_010 0.1702677133 - - Uncharacterized protein TCM_024268 [Theobroma cacao]

Gene co-expression network

sample Hb_000289_090 Hb_000289_090 Hb_012796_030 Hb_012796_030 Hb_000289_090--Hb_012796_030 Hb_003440_080 Hb_003440_080 Hb_000289_090--Hb_003440_080 Hb_004994_200 Hb_004994_200 Hb_000289_090--Hb_004994_200 Hb_010863_070 Hb_010863_070 Hb_000289_090--Hb_010863_070 Hb_119832_010 Hb_119832_010 Hb_000289_090--Hb_119832_010 Hb_004372_050 Hb_004372_050 Hb_000289_090--Hb_004372_050 Hb_012796_030--Hb_003440_080 Hb_000574_340 Hb_000574_340 Hb_012796_030--Hb_000574_340 Hb_005092_090 Hb_005092_090 Hb_012796_030--Hb_005092_090 Hb_006787_070 Hb_006787_070 Hb_012796_030--Hb_006787_070 Hb_012796_030--Hb_004994_200 Hb_003440_080--Hb_000574_340 Hb_000951_070 Hb_000951_070 Hb_003440_080--Hb_000951_070 Hb_003440_080--Hb_119832_010 Hb_027337_130 Hb_027337_130 Hb_003440_080--Hb_027337_130 Hb_000331_220 Hb_000331_220 Hb_004994_200--Hb_000331_220 Hb_002818_070 Hb_002818_070 Hb_004994_200--Hb_002818_070 Hb_004994_200--Hb_000574_340 Hb_001836_010 Hb_001836_010 Hb_004994_200--Hb_001836_010 Hb_010863_070--Hb_012796_030 Hb_010863_070--Hb_004372_050 Hb_016734_040 Hb_016734_040 Hb_010863_070--Hb_016734_040 Hb_149345_010 Hb_149345_010 Hb_010863_070--Hb_149345_010 Hb_010863_070--Hb_003440_080 Hb_000311_110 Hb_000311_110 Hb_119832_010--Hb_000311_110 Hb_009393_110 Hb_009393_110 Hb_119832_010--Hb_009393_110 Hb_029510_060 Hb_029510_060 Hb_119832_010--Hb_029510_060 Hb_004951_030 Hb_004951_030 Hb_119832_010--Hb_004951_030 Hb_003796_010 Hb_003796_010 Hb_119832_010--Hb_003796_010 Hb_002990_020 Hb_002990_020 Hb_004372_050--Hb_002990_020 Hb_167136_010 Hb_167136_010 Hb_004372_050--Hb_167136_010 Hb_002471_280 Hb_002471_280 Hb_004372_050--Hb_002471_280 Hb_004643_020 Hb_004643_020 Hb_004372_050--Hb_004643_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.389709 0.0617761 0.130804 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.100128 0.880364

CAGE analysis