Hb_002471_280

Information

Type -
Description -
Location Contig2471: 286218-291434
Sequence    

Annotation

kegg
ID rcu:RCOM_1148640
description cyclin, putative
nr
ID XP_012072513.1
description PREDICTED: cyclin-SDS [Jatropha curcas]
swissprot
ID Q1PFW3
description Cyclin-SDS OS=Arabidopsis thaliana GN=SDS PE=1 SV=2
trembl
ID A0A067KPL0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04794 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin-sds

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25677: 288118-289905 , PASA_asmbl_25678: 290614-291073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_280 0.0 - - PREDICTED: cyclin-SDS [Jatropha curcas]
2 Hb_167136_010 0.0740201082 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_012691_060 0.1465957125 - - PREDICTED: isoflavone 2'-hydroxylase-like isoform X1 [Prunus mume]
4 Hb_004372_050 0.147879956 - - putative receptor-like protein kinase [Morus notabilis]
5 Hb_002990_020 0.1663251167 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
6 Hb_000138_180 0.1755543002 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
7 Hb_043127_010 0.1769556557 - - PREDICTED: uncharacterized protein LOC105648822 [Jatropha curcas]
8 Hb_001267_020 0.1838922911 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
9 Hb_009785_020 0.1854435245 - - PREDICTED: nucleolin [Populus euphratica]
10 Hb_082972_010 0.1876692011 - - -
11 Hb_004643_020 0.1880056335 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
12 Hb_037519_010 0.1910397297 - - PREDICTED: auxin-induced in root cultures protein 12-like [Jatropha curcas]
13 Hb_005018_030 0.1946294998 - - hypothetical protein CICLE_v10019811mg [Citrus clementina]
14 Hb_001817_110 0.1999222893 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
15 Hb_002060_070 0.201409133 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
16 Hb_002474_020 0.2038284509 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104585652 [Nelumbo nucifera]
17 Hb_000193_090 0.2057138595 - - cysteine protease, putative [Ricinus communis]
18 Hb_089305_040 0.2065009796 - - -
19 Hb_006827_010 0.2083908509 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
20 Hb_149345_010 0.2087460064 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002471_280 Hb_002471_280 Hb_167136_010 Hb_167136_010 Hb_002471_280--Hb_167136_010 Hb_012691_060 Hb_012691_060 Hb_002471_280--Hb_012691_060 Hb_004372_050 Hb_004372_050 Hb_002471_280--Hb_004372_050 Hb_002990_020 Hb_002990_020 Hb_002471_280--Hb_002990_020 Hb_000138_180 Hb_000138_180 Hb_002471_280--Hb_000138_180 Hb_043127_010 Hb_043127_010 Hb_002471_280--Hb_043127_010 Hb_009785_020 Hb_009785_020 Hb_167136_010--Hb_009785_020 Hb_167136_010--Hb_004372_050 Hb_167136_010--Hb_002990_020 Hb_004643_020 Hb_004643_020 Hb_167136_010--Hb_004643_020 Hb_167136_010--Hb_000138_180 Hb_005018_030 Hb_005018_030 Hb_012691_060--Hb_005018_030 Hb_005183_030 Hb_005183_030 Hb_012691_060--Hb_005183_030 Hb_082972_010 Hb_082972_010 Hb_012691_060--Hb_082972_010 Hb_012691_060--Hb_043127_010 Hb_019925_020 Hb_019925_020 Hb_012691_060--Hb_019925_020 Hb_037519_010 Hb_037519_010 Hb_012691_060--Hb_037519_010 Hb_004372_050--Hb_002990_020 Hb_000289_090 Hb_000289_090 Hb_004372_050--Hb_000289_090 Hb_010863_070 Hb_010863_070 Hb_004372_050--Hb_010863_070 Hb_004372_050--Hb_004643_020 Hb_002990_020--Hb_004643_020 Hb_002990_020--Hb_000138_180 Hb_006827_010 Hb_006827_010 Hb_002990_020--Hb_006827_010 Hb_001267_020 Hb_001267_020 Hb_000138_180--Hb_001267_020 Hb_000138_180--Hb_006827_010 Hb_006616_070 Hb_006616_070 Hb_000138_180--Hb_006616_070 Hb_002474_020 Hb_002474_020 Hb_000138_180--Hb_002474_020 Hb_000450_110 Hb_000450_110 Hb_000138_180--Hb_000450_110 Hb_000138_180--Hb_004643_020 Hb_001817_110 Hb_001817_110 Hb_043127_010--Hb_001817_110 Hb_043127_010--Hb_082972_010 Hb_002837_080 Hb_002837_080 Hb_043127_010--Hb_002837_080 Hb_013407_010 Hb_013407_010 Hb_043127_010--Hb_013407_010 Hb_002060_070 Hb_002060_070 Hb_043127_010--Hb_002060_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0313281 0 0.0259703 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.083986

CAGE analysis